EnhancerDB
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  3. vista42347[chr3:127795566-127796407]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42347[chr3:127795566-127796407]
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Tissue distribution of vista42347
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Transcription factor that possibly regulate vista42347[chr3:127795566-127796407]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 127795450 127796805 POLR2A UCSC Txn Factor no Conserved 108530273
chr3 127795537 127796213 GATA1 UCSC Txn Factor no Conserved 108530274
chr3 127795676 127796084 CCNT2 UCSC Txn Factor no Conserved 108530275
chr3 127795707 127796042 HMGN3 UCSC Txn Factor no Conserved 108530276
chr3 127795724 127796028 GATA2 UCSC Txn Factor no Conserved 108530277
chr3 127795783 127795943 TAL1 UCSC Txn Factor no Conserved 108530278
chr3 127795555 127795566 NRF1 JASPAR yes 5564810
chr3 127795555 127795566 NRF1 JASPAR yes 71048360
chr3 127795603 127795613 GCM2 JASPAR yes 5564811
chr3 127795603 127795613 GCM2 JASPAR yes 71048361
chr3 127795607 127795621 ZIC1 JASPAR yes 5564812
chr3 127795607 127795621 ZIC1 JASPAR yes 71048362
chr3 127795607 127795622 ZIC3 JASPAR yes 5564813
chr3 127795607 127795622 ZIC3 JASPAR yes 71048363
chr3 127795660 127795674 MTF1 JASPAR yes 5564814
chr3 127795660 127795674 MTF1 JASPAR yes 71048364
chr3 127795682 127795702 RREB1 JASPAR yes 5564815
chr3 127795682 127795702 RREB1 JASPAR yes 71048365
chr3 127795687 127795697 SP1 JASPAR yes 5564816
chr3 127795687 127795697 SP1 JASPAR yes 71048366
chr3 127795711 127795721 SP1 JASPAR yes 5564817
chr3 127795711 127795721 SP1 JASPAR yes 71048367
chr3 127795716 127795728 HINFP JASPAR yes 5564818
chr3 127795716 127795728 HINFP JASPAR yes 71048368
chr3 127795719 127795723 H4TF2 TRANSFAC yes 5564819
chr3 127795719 127795723 H4TF2 TRANSFAC yes 71048369
chr3 127795722 127795733 NRF1 JASPAR yes 5564820
chr3 127795722 127795733 NRF1 JASPAR yes 71048370
chr3 127795726 127795735 HIC2 JASPAR yes 5564821
chr3 127795726 127795735 HIC2 JASPAR yes 71048371
chr3 127795732 127795751 REST JASPAR yes 5564822
chr3 127795732 127795751 REST JASPAR yes 71048372
chr3 127795741 127795753 NHLH1 JASPAR yes 5564823
chr3 127795741 127795753 NHLH1 JASPAR yes 71048373
chr3 127795742 127795752 NHLH1 JASPAR yes 5564824
chr3 127795742 127795752 NHLH1 JASPAR yes 71048374
chr3 127795751 127795763 HINFP JASPAR yes 5564825
chr3 127795751 127795763 HINFP JASPAR yes 71048375
chr3 127795756 127795762 MZF1 JASPAR yes 5564826
chr3 127795756 127795762 MZF1 JASPAR yes 71048376
chr3 127795758 127795766 BSX JASPAR yes 5564827
chr3 127795758 127795766 BSX JASPAR yes 71048377
chr3 127795760 127795764 YY1 TRANSFAC yes 5564828
chr3 127795760 127795764 YY1 TRANSFAC yes 71048378
chr3 127795781 127795802 REST JASPAR yes 5564829
chr3 127795781 127795802 REST JASPAR yes 71048379
chr3 127795822 127795827 SP1 TRANSFAC yes 5564830
chr3 127795822 127795827 SP1 TRANSFAC yes 71048380
chr3 127795825 127795842 RXRA JASPAR yes 5564831
chr3 127795825 127795842 RXRA JASPAR yes 71048381
chr3 127795835 127795853 NFYA JASPAR yes 5564832
chr3 127795835 127795853 NFYA JASPAR yes 71048382
chr3 127795837 127795841 LFA1 TRANSFAC yes 5564833
chr3 127795837 127795841 LFA1 TRANSFAC yes 71048383
chr3 127795885 127795899 ZIC1 JASPAR yes 5564834
chr3 127795885 127795899 ZIC1 JASPAR yes 71048384
chr3 127795885 127795900 ZIC4 JASPAR yes 5564835
chr3 127795885 127795900 ZIC4 JASPAR yes 71048385
chr3 127795887 127795892 SP1 TRANSFAC yes 5564836
chr3 127795887 127795892 SP1 TRANSFAC yes 71048386
chr3 127795901 127795906 SP1 TRANSFAC yes 5564837
chr3 127795901 127795906 SP1 TRANSFAC yes 71048387
chr3 127795905 127795914 SOX9 JASPAR yes 5564838
chr3 127795905 127795914 SOX9 JASPAR yes 71048388
chr3 127795927 127795936 TFAP2A JASPAR yes 5564839
chr3 127795927 127795936 TFAP2A JASPAR yes 71048389
chr3 127795932 127795949 ESR1 JASPAR yes 5564840
chr3 127795932 127795949 ESR1 JASPAR yes 71048390
chr3 127795933 127795948 ESR2 JASPAR yes 5564841
chr3 127795933 127795948 ESR2 JASPAR yes 71048391
chr3 127795933 127795953 ESR1 JASPAR yes 5564842
chr3 127795933 127795953 ESR1 JASPAR yes 71048392
chr3 127795934 127795938 ESR1 TRANSFAC yes 5564843
chr3 127795934 127795938 ESR1 TRANSFAC yes 71048393
chr3 127795936 127795945 TFAP4 TRANSFAC yes 5564844
chr3 127795936 127795945 TFAP4 TRANSFAC yes 71048394
chr3 127795943 127795963 ESR1 JASPAR yes 5564845
chr3 127795943 127795963 ESR1 JASPAR yes 71048395
chr3 127795989 127795995 YY1 JASPAR yes 5564846
chr3 127795989 127795995 YY1 JASPAR yes 71048396
chr3 127795994 127795999 SP1 TRANSFAC yes 5564847
chr3 127795994 127795999 SP1 TRANSFAC yes 71048397
chr3 127796000 127796013 TFAP2A JASPAR yes 5564848
chr3 127796000 127796013 TFAP2A JASPAR yes 71048398
chr3 127796017 127796021 YY1 TRANSFAC yes 5564849
chr3 127796017 127796021 YY1 TRANSFAC yes 71048399
chr3 127796024 127796029 MYC TRANSFAC yes 5564850
chr3 127796024 127796029 MYC TRANSFAC yes 71048400
chr3 127796031 127796042 E2F1 JASPAR yes 5564851
chr3 127796031 127796042 E2F1 JASPAR yes 71048401
chr3 127796047 127796053 MAZ TRANSFAC yes 5564852
chr3 127796047 127796053 MAZ TRANSFAC yes 71048402
chr3 127796051 127796062 E2F1 JASPAR yes 5564853
chr3 127796051 127796062 E2F1 JASPAR yes 71048403
chr3 127796052 127796057 SP1 TRANSFAC yes 5564854
chr3 127796052 127796057 SP1 TRANSFAC yes 71048404
chr3 127796059 127796078 CTCF JASPAR yes 5564855
chr3 127796059 127796078 CTCF JASPAR yes 71048405
chr3 127796060 127796064 LFA1 TRANSFAC yes 5564856
chr3 127796060 127796064 LFA1 TRANSFAC yes 71048406
chr3 127796081 127796094 TFAP2A JASPAR yes 5564857
chr3 127796081 127796094 TFAP2A JASPAR yes 71048407
chr3 127796108 127796120 ELF4 JASPAR yes 5564858
chr3 127796108 127796120 ELF4 JASPAR yes 71048408
chr3 127796115 127796120 SP1 TRANSFAC yes 5564859
chr3 127796115 127796120 SP1 TRANSFAC yes 71048409
chr3 127796118 127796130 NHLH1 JASPAR yes 5564860
chr3 127796118 127796130 NHLH1 JASPAR yes 71048410
chr3 127796131 127796138 SP1 TRANSFAC yes 5564861
chr3 127796131 127796138 SP1 TRANSFAC yes 71048411
chr3 127796133 127796138 SP1 TRANSFAC yes 5564862
chr3 127796133 127796138 SP1 TRANSFAC yes 71048412
chr3 127796141 127796155 PLAG1 JASPAR yes 5564863
chr3 127796141 127796155 PLAG1 JASPAR yes 71048413
chr3 127796151 127796157 MZF1 JASPAR yes 5564864
chr3 127796151 127796157 MZF1 JASPAR yes 71048414
chr3 127796153 127796161 SP1 TRANSFAC yes 5564865
chr3 127796153 127796161 SP1 TRANSFAC yes 71048415
chr3 127796153 127796163 SP1 JASPAR yes 5564866
chr3 127796153 127796163 SP1 JASPAR yes 71048416
chr3 127796159 127796180 ZNF263 JASPAR yes 5564867
chr3 127796159 127796180 ZNF263 JASPAR yes 71048417
chr3 127796164 127796184 ESR1 JASPAR yes 5564868
chr3 127796164 127796184 ESR1 JASPAR yes 71048418
chr3 127796169 127796184 ESR2 JASPAR yes 5564869
chr3 127796169 127796184 ESR2 JASPAR yes 71048419
chr3 127796172 127796193 ZNF263 JASPAR yes 5564870
chr3 127796172 127796193 ZNF263 JASPAR yes 71048420
chr3 127796173 127796194 ZNF263 JASPAR yes 5564871
chr3 127796173 127796194 ZNF263 JASPAR yes 71048421
chr3 127796185 127796189 NFE TRANSFAC yes 5564872
chr3 127796185 127796189 NFE TRANSFAC yes 71048422
chr3 127796186 127796191 GATA2 JASPAR yes 5564873
chr3 127796186 127796191 GATA2 JASPAR yes 71048423
chr3 127796206 127796212 MZF1 JASPAR yes 5564874
chr3 127796206 127796212 MZF1 JASPAR yes 71048424
chr3 127796242 127796248 PEA3 TRANSFAC yes 5564875
chr3 127796242 127796248 PEA3 TRANSFAC yes 71048425
chr3 127796242 127796253 FLI1 JASPAR yes 5564876
chr3 127796242 127796253 FLI1 JASPAR yes 71048426
chr3 127796242 127796263 ZNF263 JASPAR yes 5564877
chr3 127796242 127796263 ZNF263 JASPAR yes 71048427
chr3 127796248 127796269 IRF1 JASPAR yes 5564878
chr3 127796248 127796269 IRF1 JASPAR yes 71048428
chr3 127796252 127796266 SPI1 JASPAR yes 5564879
chr3 127796252 127796266 STAT1 JASPAR yes 5564880
chr3 127796252 127796266 SPI1 JASPAR yes 71048429
chr3 127796252 127796266 STAT1 JASPAR yes 71048430
chr3 127796252 127796267 STAT2 JASPAR yes 5564881
chr3 127796252 127796267 STAT2 JASPAR yes 71048431
chr3 127796256 127796263 SPIB JASPAR yes 5564882
chr3 127796256 127796263 SPIB JASPAR yes 71048432
chr3 127796319 127796333 EBF1 JASPAR yes 5564883
chr3 127796319 127796333 EBF1 JASPAR yes 71048433
chr3 127796402 127796406 ESR1 TRANSFAC yes 5564884
chr3 127796402 127796406 ESR1 TRANSFAC yes 71048434
chr3 127796405 127796409 YY1 TRANSFAC yes 5564885
chr3 127796405 127796409 YY1 TRANSFAC yes 71048435
SNP sites on vista42347[chr3:127795566-127796407]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 127795569 rs13094149 C T
GATA1 POLR2A
7016957
chr3 127795592 rs554191778 C T
GATA1 POLR2A
7016958
chr3 127795710 rs150141610 C G
CCNT2 GATA1 HMGN3 POLR2A
7016959
chr3 127795743 rs145227301 C T
CCNT2 GATA1 GATA2 HMGN3 NHLH1 POLR2A REST
7016960
chr3 127795886 rs551327463 C A,T
CCNT2 GATA1 GATA2 HMGN3 POLR2A TAL1 ZIC1 ZIC4
7016961
chr3 127795972 rs13099396 G A
CCNT2 GATA1 GATA2 HMGN3 POLR2A
7016962
chr3 127796005 rs2010972 C G
CCNT2 GATA1 GATA2 HMGN3 POLR2A TFAP2A
7016963
chr3 127796129 rs556254781 G A
GATA1 NHLH1 POLR2A
7016964
chr3 127796241 rs116207586 C T
POLR2A
7016965
chr3 127796279 rs572691691 T C
POLR2A
7016966
chr3 127796292 rs536944642 A C
POLR2A
7016967
chr3 127796312 rs576716992 C G
POLR2A
7016968
Genes possibly regulated by vista42347[chr3:127795566-127796407]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 127770484 127790526 + SEC61A1 ENSG00000058262.5 127770484 0.66 1.0 4049 74918
chr3 127783621 127872757 - RUVBL1 ENSG00000175792.7 127872757 0.8 1.0 4050 23650
chr3 127872297 128127485 + EEFSEC ENSG00000132394.6 127872297 0.62 1.0 4051 24110
Expression level of Genes
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miRNAs possibly regulated by vista42347[chr3:127795566-127796407]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results