EnhancerDB
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  3. vista42400[chr3:128954316-128954512]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42400[chr3:128954316-128954512]
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Tissue distribution of vista42400
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Transcription factor that possibly regulate vista42400[chr3:128954316-128954512]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 128954327 128954343 SOX8 JASPAR yes 5648098
chr3 128954327 128954343 SOX8 JASPAR yes 71050817
chr3 128954330 128954335 H4TF1 TRANSFAC yes 5648099
chr3 128954330 128954335 H4TF1 TRANSFAC yes 71050818
chr3 128954347 128954358 EBF1 JASPAR yes 5648100
chr3 128954347 128954358 EBF1 JASPAR yes 71050819
chr3 128954356 128954367 HOXA10 JASPAR yes 5648101
chr3 128954356 128954367 HOXA10 JASPAR yes 71050820
chr3 128954357 128954366 CDX1 JASPAR yes 5648102
chr3 128954357 128954366 CDX1 JASPAR yes 71050821
chr3 128954357 128954368 CDX2 JASPAR yes 5648103
chr3 128954357 128954368 CDX2 JASPAR yes 71050822
chr3 128954415 128954434 PAX5 JASPAR yes 5648104
chr3 128954415 128954434 PAX5 JASPAR yes 71050823
chr3 128954419 128954423 H1TF2 TRANSFAC yes 5648105
chr3 128954419 128954423 NFE TRANSFAC yes 5648106
chr3 128954419 128954423 SRF TRANSFAC yes 5648107
chr3 128954419 128954423 H1TF2 TRANSFAC yes 71050824
chr3 128954419 128954423 NFE TRANSFAC yes 71050825
chr3 128954419 128954423 SRF TRANSFAC yes 71050826
chr3 128954419 128954425 NFYC TRANSFAC yes 5648108
chr3 128954419 128954425 NFYC TRANSFAC yes 71050827
chr3 128954435 128954452 ZNF410 JASPAR yes 5648109
chr3 128954435 128954452 ZNF410 JASPAR yes 71050828
chr3 128954453 128954459 LEF1 TRANSFAC yes 5648110
chr3 128954453 128954459 SOX10 JASPAR yes 5648111
chr3 128954453 128954459 LEF1 TRANSFAC yes 71050829
chr3 128954453 128954459 SOX10 JASPAR yes 71050830
chr3 128954458 128954469 PHOX2A JASPAR yes 5648112
chr3 128954458 128954469 PROP1 JASPAR yes 5648113
chr3 128954458 128954469 PHOX2A JASPAR yes 71050831
chr3 128954458 128954469 PROP1 JASPAR yes 71050832
chr3 128954489 128954498 THAP1 JASPAR yes 5648114
chr3 128954489 128954498 THAP1 JASPAR yes 71050833
SNP sites on vista42400[chr3:128954316-128954512]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 128954359 rs62266862 T A
CDX1 CDX2 HOXA10
7024663
chr3 128954509 rs562445576 CTT C no 7024664
Genes possibly regulated by vista42400[chr3:128954316-128954512]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 128806418 128879879 - ISY1-RAB43 ENSG00000261796.1 128879879 0.91 0.81 4063 25563
chr3 128846258 128880136 - ISY1 ENSG00000240682.5 128880136 0.67 0.98 4064 25820
chr3 128888327 128902765 - CNBP ENSG00000169714.12 128902765 0.59 1.0 4065 48449
chr3 128968449 128996614 + COPG1 ENSG00000181789.10 128968449 0.55 1.0 4066 86063
chr3 128997671 129025029 + HMCES ENSG00000183624.9 128997671 0.57 1.0 4067 56841
chr3 129033615 129035120 - H1FX ENSG00000184897.4 129035120 0.76 1.0 4068 19392
Expression level of Genes
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miRNAs possibly regulated by vista42400[chr3:128954316-128954512]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results