EnhancerDB
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  3. vista48236[chr5:80490965-80491330]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista48236[chr5:80490965-80491330]
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Tissue distribution of vista48236
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Transcription factor that possibly regulate vista48236[chr5:80490965-80491330]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 80490704 80491214 E2F6 UCSC Txn Factor no Conserved 108535561
chr5 80490819 80491247 CTCF UCSC Txn Factor no Conserved 108535562
chr5 80490829 80491168 ZNF263 UCSC Txn Factor no Conserved 108535563
chr5 80490907 80491175 RAD21 UCSC Txn Factor no Conserved 108535564
chr5 80490920 80491194 SMC3 UCSC Txn Factor no Conserved 108535565
chr5 80490955 80490966 CDX2 JASPAR yes 63756960
chr5 80490955 80490966 CDX2 JASPAR yes 70672434
chr5 80490955 80490969 FOXF2 JASPAR yes 63756961
chr5 80490955 80490969 FOXF2 JASPAR yes 70672435
chr5 80490956 80490967 HOXA10 JASPAR yes 63756962
chr5 80490956 80490967 HOXC11 JASPAR yes 63756963
chr5 80490956 80490967 HOXA10 JASPAR yes 70672436
chr5 80490956 80490967 HOXC11 JASPAR yes 70672437
chr5 80490957 80490966 CDX1 JASPAR yes 63756964
chr5 80490957 80490966 CDX1 JASPAR yes 70672438
chr5 80490957 80490967 HOXC10 JASPAR yes 63756965
chr5 80490957 80490967 HOXD11 JASPAR yes 63756966
chr5 80490957 80490967 HOXC10 JASPAR yes 70672439
chr5 80490957 80490967 HOXD11 JASPAR yes 70672440
chr5 80490960 80490968 FOXG1 JASPAR yes 63756967
chr5 80490960 80490968 FOXG1 JASPAR yes 70672441
chr5 80490968 80490972 LFA1 TRANSFAC yes 63756968
chr5 80490968 80490972 LFA1 TRANSFAC yes 70672442
chr5 80490979 80490988 SP1 TRANSFAC yes 63756969
chr5 80490979 80490988 SP1 TRANSFAC yes 70672443
chr5 80490981 80490996 TFAP2C JASPAR yes 63756970
chr5 80490981 80490996 TFAP2C JASPAR yes 70672444
chr5 80490991 80491003 TFAP2A JASPAR yes 63756971
chr5 80490991 80491003 TFAP2A JASPAR yes 70672445
chr5 80491010 80491015 SP1 TRANSFAC yes 63756972
chr5 80491010 80491015 SP1 TRANSFAC yes 70672446
chr5 80491026 80491030 H1TF2 TRANSFAC yes 63756973
chr5 80491026 80491030 NFE TRANSFAC yes 63756974
chr5 80491026 80491030 SRF TRANSFAC yes 63756975
chr5 80491026 80491030 H1TF2 TRANSFAC yes 70672447
chr5 80491026 80491030 NFE TRANSFAC yes 70672448
chr5 80491026 80491030 SRF TRANSFAC yes 70672449
chr5 80491041 80491060 CTCF JASPAR yes 63756976
chr5 80491041 80491060 CTCF JASPAR yes 70672450
chr5 80491042 80491054 YY1 JASPAR yes 63756977
chr5 80491042 80491054 YY1 JASPAR yes 70672451
chr5 80491045 80491051 YY1 JASPAR yes 63756978
chr5 80491045 80491051 YY1 JASPAR yes 70672452
chr5 80491049 80491061 GLI2 JASPAR yes 63756979
chr5 80491049 80491061 GLI2 JASPAR yes 70672453
chr5 80491050 80491062 ZBTB7A JASPAR yes 63756980
chr5 80491050 80491062 ZBTB7A JASPAR yes 70672454
chr5 80491104 80491109 MYC TRANSFAC yes 63756981
chr5 80491104 80491109 MYC TRANSFAC yes 70672455
chr5 80491119 80491124 TFAP2A TRANSFAC yes 63756982
chr5 80491119 80491124 TFAP2A TRANSFAC yes 70672456
chr5 80491119 80491125 MZF1 JASPAR yes 63756983
chr5 80491119 80491125 MZF1 JASPAR yes 70672457
chr5 80491132 80491136 H1TF2 TRANSFAC yes 63756984
chr5 80491132 80491136 NFE TRANSFAC yes 63756985
chr5 80491132 80491136 SRF TRANSFAC yes 63756986
chr5 80491132 80491136 H1TF2 TRANSFAC yes 70672458
chr5 80491132 80491136 NFE TRANSFAC yes 70672459
chr5 80491132 80491136 SRF TRANSFAC yes 70672460
chr5 80491134 80491144 MEOX2 JASPAR yes 63756987
chr5 80491134 80491144 MEOX2 JASPAR yes 70672461
chr5 80491159 80491171 PKNOX1 JASPAR yes 63756988
chr5 80491159 80491171 PKNOX2 JASPAR yes 63756989
chr5 80491159 80491171 PKNOX1 JASPAR yes 70672462
chr5 80491159 80491171 PKNOX2 JASPAR yes 70672463
chr5 80491163 80491176 SMAD2 JASPAR yes 63756990
chr5 80491163 80491176 SMAD2 JASPAR yes 70672464
chr5 80491165 80491169 NFE TRANSFAC yes 63756991
chr5 80491165 80491169 NFE TRANSFAC yes 70672465
chr5 80491177 80491181 YY1 TRANSFAC yes 63756992
chr5 80491177 80491181 YY1 TRANSFAC yes 70672466
chr5 80491200 80491209 POU5F1B JASPAR yes 63756993
chr5 80491200 80491209 POU5F1B JASPAR yes 70672467
chr5 80491200 80491210 MEF2A JASPAR yes 63756994
chr5 80491200 80491210 MEF2A JASPAR yes 70672468
chr5 80491201 80491215 RORA JASPAR yes 63756995
chr5 80491201 80491215 RORA JASPAR yes 70672469
chr5 80491209 80491213 LFA1 TRANSFAC yes 63756996
chr5 80491209 80491213 LFA1 TRANSFAC yes 70672470
chr5 80491228 80491243 IRF9 JASPAR yes 63756997
chr5 80491228 80491243 IRF9 JASPAR yes 70672471
chr5 80491234 80491239 H4TF1 TRANSFAC yes 63756998
chr5 80491234 80491239 H4TF1 TRANSFAC yes 70672472
chr5 80491263 80491267 YY1 TRANSFAC yes 63756999
chr5 80491263 80491267 YY1 TRANSFAC yes 70672473
chr5 80491289 80491293 H1TF2 TRANSFAC yes 63757000
chr5 80491289 80491293 NFE TRANSFAC yes 63757001
chr5 80491289 80491293 SRF TRANSFAC yes 63757002
chr5 80491289 80491293 H1TF2 TRANSFAC yes 70672474
chr5 80491289 80491293 NFE TRANSFAC yes 70672475
chr5 80491289 80491293 SRF TRANSFAC yes 70672476
chr5 80491298 80491302 YY1 TRANSFAC yes 63757003
chr5 80491298 80491302 YY1 TRANSFAC yes 70672477
chr5 80491300 80491320 TBX19 JASPAR yes 63757004
chr5 80491300 80491320 TBX19 JASPAR yes 70672478
chr5 80491309 80491313 YY1 TRANSFAC yes 63757005
chr5 80491309 80491313 YY1 TRANSFAC yes 70672479
chr5 80491315 80491321 TBP TRANSFAC yes 63757006
chr5 80491315 80491321 TBP TRANSFAC yes 70672480
SNP sites on vista48236[chr5:80490965-80491330]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 80491017 rs553271877 C CGCGCCAGAGCCAATGCTGACCCGGGA
CTCF E2F6 RAD21 SMC3 ZNF263
8341440
chr5 80491022 rs73768036 C T
CTCF E2F6 RAD21 SMC3 ZNF263
8341441
chr5 80491100 rs17227806 T C
CTCF E2F6 RAD21 SMC3 ZNF263
8341442
chr5 80491108 rs75069784 C T
CTCF E2F6 MYC RAD21 SMC3 ZNF263
8341443
chr5 80491210 rs75064654 G C
CTCF E2F6 LFA1 MEF2A RORA
8341444
chr5 80491300 rs532757225 A G
TBX19 YY1
8341445
Genes possibly regulated by vista48236[chr5:80490965-80491330]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 80529104 80562216 + CKMT2 ENSG00000131730.11 80529104 0.99 1.0 5505 62226
Expression level of Genes
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miRNAs possibly regulated by vista48236[chr5:80490965-80491330]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results