EnhancerDB
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  3. vista50196[chr5:172329840-172330200]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50196[chr5:172329840-172330200]
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Tissue distribution of vista50196
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Transcription factor that possibly regulate vista50196[chr5:172329840-172330200]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 172329552 172330307 EP300 UCSC Txn Factor no Conserved 108537538
chr5 172329631 172330262 TCF12 UCSC Txn Factor no Conserved 108537539
chr5 172329793 172330304 NR3C1 UCSC Txn Factor no Conserved 108537540
chr5 172329888 172330513 CTCF UCSC Txn Factor no Conserved 108537541
chr5 172329915 172330232 EGR1 UCSC Txn Factor no Conserved 108537542
chr5 172329943 172330235 RAD21 UCSC Txn Factor no Conserved 108537543
chr5 172329832 172329842 RORA JASPAR yes 67841846
chr5 172329832 172329842 RORA JASPAR yes 70764813
chr5 172329833 172329846 NR2F1 JASPAR yes 67841847
chr5 172329833 172329846 NR2F1 JASPAR yes 70764814
chr5 172329837 172329841 ESR1 TRANSFAC yes 67841848
chr5 172329837 172329841 ESR1 TRANSFAC yes 70764815
chr5 172329862 172329878 SOX4 JASPAR yes 67841849
chr5 172329862 172329878 SOX4 JASPAR yes 70764816
chr5 172329866 172329870 YY1 TRANSFAC yes 67841850
chr5 172329866 172329870 YY1 TRANSFAC yes 70764817
chr5 172329868 172329877 NKX2-8 JASPAR yes 67841851
chr5 172329868 172329877 NKX2-8 JASPAR yes 70764818
chr5 172329868 172329878 NKX2-3 JASPAR yes 67841852
chr5 172329868 172329878 NKX2-3 JASPAR yes 70764819
chr5 172329869 172329877 ISL2 JASPAR yes 67841853
chr5 172329869 172329877 ISL2 JASPAR yes 70764820
chr5 172329869 172329878 NKX3-2 JASPAR yes 67841854
chr5 172329869 172329878 NKX3-2 JASPAR yes 70764821
chr5 172329883 172329894 FOXA1 JASPAR yes 67841855
chr5 172329883 172329894 FOXA1 JASPAR yes 70764822
chr5 172329883 172329898 FOXA1 JASPAR yes 67841856
chr5 172329883 172329898 FOXA1 JASPAR yes 70764823
chr5 172329884 172329895 FOXC1 JASPAR yes 67841857
chr5 172329884 172329895 FOXC1 JASPAR yes 70764824
chr5 172329884 172329896 FOXC2 JASPAR yes 67841858
chr5 172329884 172329896 FOXC2 JASPAR yes 70764825
chr5 172329887 172329902 SOX21 JASPAR yes 67841859
chr5 172329887 172329902 SOX21 JASPAR yes 70764826
chr5 172329888 172329898 HOXB13 JASPAR yes 67841860
chr5 172329888 172329898 HOXB13 JASPAR yes 70764827
chr5 172329896 172329905 SRY JASPAR yes 67841861
chr5 172329896 172329905 SRY JASPAR yes 70764828
chr5 172329956 172329966 TEAD1 JASPAR yes 67841862
chr5 172329956 172329966 TEAD4 JASPAR yes 67841863
chr5 172329956 172329966 TEAD1 JASPAR yes 70764829
chr5 172329956 172329966 TEAD4 JASPAR yes 70764830
chr5 172329957 172329965 TEAD3 JASPAR yes 67841864
chr5 172329957 172329965 TEAD3 JASPAR yes 70764831
chr5 172329963 172329967 YY1 TRANSFAC yes 67841865
chr5 172329963 172329967 YY1 TRANSFAC yes 70764832
chr5 172329970 172329990 RREB1 JASPAR yes 67841866
chr5 172329970 172329990 RREB1 JASPAR yes 70764833
chr5 172329970 172329991 ZNF263 JASPAR yes 67841867
chr5 172329970 172329991 ZNF263 JASPAR yes 70764834
chr5 172329971 172329981 ZNF740 JASPAR yes 67841868
chr5 172329971 172329981 ZNF740 JASPAR yes 70764835
chr5 172329973 172329987 PLAG1 JASPAR yes 67841869
chr5 172329973 172329987 PLAG1 JASPAR yes 70764836
chr5 172329973 172329993 RREB1 JASPAR yes 67841870
chr5 172329973 172329993 RREB1 JASPAR yes 70764837
chr5 172329973 172329994 ZNF263 JASPAR yes 67841871
chr5 172329973 172329994 ZNF263 JASPAR yes 70764838
chr5 172329974 172329994 RREB1 JASPAR yes 67841872
chr5 172329974 172329994 RREB1 JASPAR yes 70764839
chr5 172329975 172329985 SP1 JASPAR yes 67841873
chr5 172329975 172329985 SP1 JASPAR yes 70764840
chr5 172329976 172329996 RREB1 JASPAR yes 67841874
chr5 172329976 172329996 RREB1 JASPAR yes 70764841
chr5 172329979 172329999 RREB1 JASPAR yes 67841875
chr5 172329979 172329999 RREB1 JASPAR yes 70764842
chr5 172329981 172329989 TBX5 JASPAR yes 67841876
chr5 172329981 172329989 TBX5 JASPAR yes 70764843
chr5 172329984 172329999 TFAP2C JASPAR yes 67841877
chr5 172329984 172329999 TFAP2C JASPAR yes 70764844
chr5 172329988 172329994 MZF1 JASPAR yes 67841878
chr5 172329988 172329994 MZF1 JASPAR yes 70764845
chr5 172330006 172330024 SRF JASPAR yes 67841879
chr5 172330006 172330024 SRF JASPAR yes 70764846
chr5 172330024 172330028 NFE TRANSFAC yes 67841880
chr5 172330024 172330028 NFE TRANSFAC yes 70764847
chr5 172330027 172330047 RREB1 JASPAR yes 67841881
chr5 172330027 172330047 RREB1 JASPAR yes 70764848
chr5 172330027 172330048 ZNF263 JASPAR yes 67841882
chr5 172330027 172330048 ZNF263 JASPAR yes 70764849
chr5 172330028 172330043 RUNX2 JASPAR yes 67841883
chr5 172330028 172330043 RUNX2 JASPAR yes 70764850
chr5 172330029 172330049 RREB1 JASPAR yes 67841884
chr5 172330029 172330049 RREB1 JASPAR yes 70764851
chr5 172330030 172330050 RREB1 JASPAR yes 67841885
chr5 172330030 172330050 RREB1 JASPAR yes 70764852
chr5 172330031 172330051 RREB1 JASPAR yes 67841886
chr5 172330031 172330051 RREB1 JASPAR yes 70764853
chr5 172330034 172330044 ZNF740 JASPAR yes 67841887
chr5 172330034 172330044 ZNF740 JASPAR yes 70764854
chr5 172330037 172330057 RREB1 JASPAR yes 67841888
chr5 172330037 172330057 RREB1 JASPAR yes 70764855
chr5 172330069 172330077 CREB1 JASPAR yes 67841889
chr5 172330069 172330077 CREB1 JASPAR yes 70764856
chr5 172330069 172330088 CTCF JASPAR yes 67841890
chr5 172330069 172330088 CTCF JASPAR yes 70764857
chr5 172330073 172330079 YY1 JASPAR yes 67841891
chr5 172330073 172330079 YY1 JASPAR yes 70764858
chr5 172330073 172330083 NEUROG2 JASPAR yes 67841892
chr5 172330073 172330083 NEUROG2 JASPAR yes 70764859
chr5 172330086 172330095 ZEB1 JASPAR yes 67841893
chr5 172330086 172330095 ZEB1 JASPAR yes 70764860
chr5 172330087 172330097 FIGLA JASPAR yes 67841894
chr5 172330087 172330097 TCF4 JASPAR yes 67841895
chr5 172330087 172330097 FIGLA JASPAR yes 70764861
chr5 172330087 172330097 TCF4 JASPAR yes 70764862
chr5 172330089 172330094 USF2 TRANSFAC yes 67841896
chr5 172330089 172330094 USF2 TRANSFAC yes 70764863
chr5 172330090 172330102 TEAD1 JASPAR yes 67841897
chr5 172330090 172330102 TEAD1 JASPAR yes 70764864
chr5 172330092 172330102 TEAD1 JASPAR yes 67841898
chr5 172330092 172330102 TEAD4 JASPAR yes 67841899
chr5 172330092 172330102 TEAD1 JASPAR yes 70764865
chr5 172330092 172330102 TEAD4 JASPAR yes 70764866
chr5 172330093 172330101 TEAD3 JASPAR yes 67841900
chr5 172330093 172330101 TEF-1 TRANSFAC yes 67841901
chr5 172330093 172330101 TEAD3 JASPAR yes 70764867
chr5 172330093 172330101 TEF-1 TRANSFAC yes 70764868
chr5 172330118 172330130 HES5 JASPAR yes 67841902
chr5 172330118 172330130 HES7 JASPAR yes 67841903
chr5 172330118 172330130 HES5 JASPAR yes 70764869
chr5 172330118 172330130 HES7 JASPAR yes 70764870
chr5 172330131 172330147 ZNF143 JASPAR yes 67841904
chr5 172330131 172330147 ZNF143 JASPAR yes 70764871
chr5 172330177 172330189 TEAD1 JASPAR yes 67841905
chr5 172330177 172330189 TEAD1 JASPAR yes 70764872
SNP sites on vista50196[chr5:172329840-172330200]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 172329850 rs143115438 C T
EP300 NR3C1 TCF12
8706360
chr5 172329875 rs11134765 T G
EP300 ISL2 NKX2-3 NKX2-8 NKX3-2 NR3C1 SOX4 TCF12
8706361
chr5 172329954 rs189599290 C T
CTCF EGR1 EP300 NR3C1 RAD21 TCF12
8706362
chr5 172330108 rs546710198 G A
CTCF EGR1 EP300 NR3C1 RAD21 TCF12
8706363
Genes possibly regulated by vista50196[chr5:172329840-172330200]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 172261278 172379688 + ERGIC1 ENSG00000113719.11 172261278 0.61 1.0 5986 31438
chr5 172385732 172396774 + RPL26L1 ENSG00000037241.3 172385732 0.85 0.99 5987 44468
chr5 172410760 172462448 + ATP6V0E1 ENSG00000113732.4 172410760 0.6 0.99 5988 19440
Expression level of Genes
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miRNAs possibly regulated by vista50196[chr5:172329840-172330200]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results