EnhancerDB
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  3. vista51486[chr6:28834475-28834586]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51486[chr6:28834475-28834586]
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Tissue distribution of vista51486
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Transcription factor that possibly regulate vista51486[chr6:28834475-28834586]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 28833198 28834850 POLR2A UCSC Txn Factor no Conserved 108539429
chr6 28834272 28834625 PHF8 UCSC Txn Factor no Conserved 108539430
chr6 28834553 28835038 E2F1 UCSC Txn Factor no Conserved 108539431
chr6 28834487 28834497 GSC2 JASPAR yes 70341561
chr6 28834487 28834497 GSC JASPAR yes 70341562
chr6 28834487 28834497 GSC2 JASPAR yes 100986854
chr6 28834487 28834497 GSC JASPAR yes 100986855
chr6 28834488 28834496 OTX1 JASPAR yes 70341563
chr6 28834488 28834496 OTX2 JASPAR yes 70341564
chr6 28834488 28834496 OTX1 JASPAR yes 100986856
chr6 28834488 28834496 OTX2 JASPAR yes 100986857
chr6 28834488 28834497 PITX3 JASPAR yes 70341565
chr6 28834488 28834497 PITX3 JASPAR yes 100986858
chr6 28834496 28834501 SP1 TRANSFAC yes 70341566
chr6 28834496 28834501 SP1 TRANSFAC yes 100986859
chr6 28834528 28834540 ZBTB7A JASPAR yes 70341567
chr6 28834528 28834540 ZBTB7A JASPAR yes 100986860
chr6 28834529 28834534 SP1 TRANSFAC yes 70341568
chr6 28834529 28834534 SP1 TRANSFAC yes 100986861
chr6 28834529 28834541 GLI2 JASPAR yes 70341569
chr6 28834529 28834541 GLI2 JASPAR yes 100986862
chr6 28834534 28834546 EHF JASPAR yes 70341570
chr6 28834534 28834546 ELF4 JASPAR yes 70341571
chr6 28834534 28834546 EHF JASPAR yes 100986863
chr6 28834534 28834546 ELF4 JASPAR yes 100986864
chr6 28834535 28834546 SPDEF JASPAR yes 70341572
chr6 28834535 28834546 SPDEF JASPAR yes 100986865
chr6 28834567 28834578 NRF1 JASPAR yes 70341573
chr6 28834567 28834578 NRF1 JASPAR yes 100986866
chr6 28834578 28834589 E2F4 JASPAR yes 70341574
chr6 28834578 28834589 E2F6 JASPAR yes 70341575
chr6 28834578 28834589 E2F4 JASPAR yes 100986867
chr6 28834578 28834589 E2F6 JASPAR yes 100986868
chr6 28834579 28834590 E2F1 JASPAR yes 70341576
chr6 28834579 28834590 E2F1 JASPAR yes 100986869
SNP sites on vista51486[chr6:28834475-28834586]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 28834486 rs555324616 T G
PHF8 POLR2A
8938226
chr6 28834528 rs367913977 C G
PHF8 POLR2A ZBTB7A
8938227
chr6 28834536 rs540855480 A G
EHF ELF4 GLI2 PHF8 POLR2A SPDEF ZBTB7A
8938228
Genes possibly regulated by vista51486[chr6:28834475-28834586]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 28870779 28891766 - TRIM27 ENSG00000204713.6 28891766 0.56 0.79 6303 42820
chr6 28911654 28912314 + C6orf100 ENSG00000204709.4 28911654 0.86 0.83 6304 22932
Expression level of Genes
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miRNAs possibly regulated by vista51486[chr6:28834475-28834586]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results