EnhancerDB
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  3. vista5153[chr1:220393257-220393560]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5153[chr1:220393257-220393560]
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Tissue distribution of vista5153
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Transcription factor that possibly regulate vista5153[chr1:220393257-220393560]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 220393040 220394259 POLR2A UCSC Txn Factor no Conserved 107870922
chr1 220393040 220394259 POLR2A UCSC Txn Factor no Conserved 107870923
chr1 220393212 220393696 RELA UCSC Txn Factor no Conserved 107870931
chr1 220393371 220393681 POU2F2 UCSC Txn Factor no Conserved 107870948
chr1 220393398 220393679 RUNX3 UCSC Txn Factor no Conserved 107870952
chr1 220393262 220393283 MAFG JASPAR yes 118460956
chr1 220393267 220393285 MAFF JASPAR yes 118460957
chr1 220393268 220393283 MAFK JASPAR yes 118460958
chr1 220393277 220393281 YY1 TRANSFAC yes 118460959
chr1 220393279 220393285 TCF4 TRANSFAC yes 118460960
chr1 220393279 220393294 FOXP1 JASPAR yes 118460961
chr1 220393297 220393301 LFA1 TRANSFAC yes 118460962
chr1 220393298 220393311 POU2F2 JASPAR yes 118460963
chr1 220393300 220393304 YY1 TRANSFAC yes 118460964
chr1 220393309 220393319 ALX3 JASPAR yes 118460965
chr1 220393309 220393319 EMX1 JASPAR yes 118460966
chr1 220393309 220393319 EMX2 JASPAR yes 118460967
chr1 220393309 220393319 EN2 JASPAR yes 118460968
chr1 220393309 220393319 ESX1 JASPAR yes 118460969
chr1 220393309 220393319 EVX1 JASPAR yes 118460970
chr1 220393309 220393319 EVX2 JASPAR yes 118460971
chr1 220393309 220393319 GBX1 JASPAR yes 118460972
chr1 220393309 220393319 GBX2 JASPAR yes 118460973
chr1 220393309 220393319 GSX1 JASPAR yes 118460974
chr1 220393309 220393319 GSX2 JASPAR yes 118460975
chr1 220393309 220393319 HESX1 JASPAR yes 118460976
chr1 220393309 220393319 HOXA2 JASPAR yes 118460977
chr1 220393309 220393319 HOXB2 JASPAR yes 118460978
chr1 220393309 220393319 HOXB3 JASPAR yes 118460979
chr1 220393309 220393319 LBX2 JASPAR yes 118460980
chr1 220393309 220393319 LHX2 JASPAR yes 118460981
chr1 220393309 220393319 LHX6 JASPAR yes 118460982
chr1 220393309 220393319 MEOX1 JASPAR yes 118460983
chr1 220393309 220393319 MEOX2 JASPAR yes 118460984
chr1 220393309 220393319 MIXL1 JASPAR yes 118460985
chr1 220393309 220393319 NOTO JASPAR yes 118460986
chr1 220393309 220393319 POU6F1 JASPAR yes 118460987
chr1 220393309 220393319 RAX JASPAR yes 118460988
chr1 220393310 220393318 EN1 JASPAR yes 118460989
chr1 220393310 220393318 ISX JASPAR yes 118460990
chr1 220393310 220393318 LBX1 JASPAR yes 118460991
chr1 220393310 220393318 LHX9 JASPAR yes 118460992
chr1 220393310 220393318 PAX4 JASPAR yes 118460993
chr1 220393310 220393318 PDX1 JASPAR yes 118460994
chr1 220393310 220393318 PRRX1 JASPAR yes 118460995
chr1 220393310 220393318 RAX2 JASPAR yes 118460996
chr1 220393310 220393318 SHOX JASPAR yes 118460997
chr1 220393310 220393318 UNCX JASPAR yes 118460998
chr1 220393310 220393318 VAX1 JASPAR yes 118460999
chr1 220393310 220393318 VAX2 JASPAR yes 118461000
chr1 220393310 220393318 VSX1 JASPAR yes 118461001
chr1 220393310 220393318 VSX2 JASPAR yes 118461002
chr1 220393310 220393324 POU1F1 JASPAR yes 118461003
chr1 220393311 220393323 POU3F2 JASPAR yes 118461004
chr1 220393311 220393324 POU3F3 JASPAR yes 118461005
chr1 220393312 220393320 HOXA5 JASPAR yes 118461006
chr1 220393323 220393330 NFATC2 JASPAR yes 118461007
chr1 220393328 220393342 SPI1 JASPAR yes 118461008
chr1 220393332 220393338 MZF1 JASPAR yes 118461009
chr1 220393335 220393339 H1TF2 TRANSFAC yes 118461010
chr1 220393335 220393339 NFE TRANSFAC yes 118461011
chr1 220393335 220393339 SRF TRANSFAC yes 118461012
chr1 220393343 220393348 SP1 TRANSFAC yes 118461013
chr1 220393358 220393361 MYB TRANSFAC yes 118461014
chr1 220393360 220393370 SP1 JASPAR yes 118461015
chr1 220393363 220393369 NFE2 TRANSFAC yes 118461016
chr1 220393366 220393380 TCF7L2 JASPAR yes 118461017
chr1 220393382 220393397 MEF2C JASPAR yes 118461018
chr1 220393383 220393398 MEF2A JASPAR yes 118461019
chr1 220393384 220393396 MEF2A JASPAR yes 118461020
chr1 220393384 220393396 MEF2B JASPAR yes 118461021
chr1 220393384 220393396 MEF2D JASPAR yes 118461022
chr1 220393385 220393395 MEF2A JASPAR yes 118461023
chr1 220393398 220393402 YY1 TRANSFAC yes 118461024
chr1 220393407 220393420 NFKB1 JASPAR yes 118461025
chr1 220393407 220393420 NFKB2 JASPAR yes 118461026
chr1 220393408 220393419 NFKB1 JASPAR yes 118461027
chr1 220393409 220393419 NFKB1 JASPAR yes 118461028
chr1 220393431 220393444 POU2F2 JASPAR yes 118461029
chr1 220393437 220393452 MEF2C JASPAR yes 118461030
chr1 220393471 220393482 EBF1 JASPAR yes 118461031
chr1 220393485 220393495 RELA JASPAR yes 118461032
chr1 220393485 220393495 REL JASPAR yes 118461033
chr1 220393485 220393496 NFKB1 JASPAR yes 118461034
chr1 220393488 220393502 E2F7 JASPAR yes 118461035
chr1 220393489 220393496 NFATC2 JASPAR yes 118461036
chr1 220393489 220393501 E2F8 JASPAR yes 118461037
chr1 220393506 220393516 ZNF740 JASPAR yes 118461038
chr1 220393531 220393546 SOX21 JASPAR yes 118461039
chr1 220393536 220393549 POU2F2 JASPAR yes 118461040
SNP sites on vista5153[chr1:220393257-220393560]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 220393359 rs74490010 T C
MYB POLR2A RELA
958890
chr1 220393414 rs12040095 T C
NFKB1 NFKB2 POLR2A POU2F2 RELA RUNX3
958891
chr1 220393514 rs79783181 C G
POLR2A POU2F2 RELA RUNX3 ZNF740
958892
chr1 220393540 rs542576224 A T
POLR2A POU2F2 RELA RUNX3 SOX21
958893
Genes possibly regulated by vista5153[chr1:220393257-220393560]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 220321635 220445796 - RAB3GAP2 ENSG00000118873.11 220445796 0.68 0.99 1856 47764
Expression level of Genes
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miRNAs possibly regulated by vista5153[chr1:220393257-220393560]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results