EnhancerDB
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  3. vista5154[chr1:220393912-220394294]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5154[chr1:220393912-220394294]
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Tissue distribution of vista5154
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Transcription factor that possibly regulate vista5154[chr1:220393912-220394294]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 220393040 220394259 POLR2A UCSC Txn Factor no Conserved 107870922
chr1 220393040 220394259 POLR2A UCSC Txn Factor no Conserved 107870923
chr1 220393915 220393929 ONECUT2 JASPAR yes 118461041
chr1 220393956 220393962 MZF1 JASPAR yes 118461042
chr1 220393962 220393983 IRF1 JASPAR yes 118461043
chr1 220393966 220393980 IRF7 JASPAR yes 118461044
chr1 220393971 220393975 YY1 TRANSFAC yes 118461045
chr1 220393986 220394002 ZNF143 JASPAR yes 118461046
chr1 220393997 220394007 CLOCK JASPAR yes 118461047
chr1 220393997 220394007 MAX JASPAR yes 118461048
chr1 220393998 220394005 USF1 JASPAR yes 118461049
chr1 220393998 220394008 MAX JASPAR yes 118461050
chr1 220393999 220394004 MYC TRANSFAC yes 118461051
chr1 220393999 220394004 USF1 TRANSFAC yes 118461052
chr1 220393999 220394004 USF2 TRANSFAC yes 118461053
chr1 220394009 220394014 ETS2 TRANSFAC yes 118461054
chr1 220394020 220394025 SP1 TRANSFAC yes 118461055
chr1 220394029 220394032 MYB TRANSFAC yes 118461056
chr1 220394029 220394040 DUX4 JASPAR yes 118461057
chr1 220394029 220394040 PHOX2A JASPAR yes 118461058
chr1 220394029 220394040 PROP1 JASPAR yes 118461059
chr1 220394044 220394049 SP1 TRANSFAC yes 118461060
chr1 220394108 220394119 NFKB1 JASPAR yes 118461061
chr1 220394108 220394121 NFKB1 JASPAR yes 118461062
chr1 220394108 220394121 NFKB2 JASPAR yes 118461063
chr1 220394109 220394119 NFKB1 JASPAR yes 118461064
chr1 220394109 220394119 RELA JASPAR yes 118461065
chr1 220394109 220394119 REL JASPAR yes 118461066
chr1 220394109 220394120 NFKB1 JASPAR yes 118461067
chr1 220394110 220394120 NFKB1 JASPAR yes 118461068
chr1 220394138 220394151 SMAD2 JASPAR yes 118461069
chr1 220394142 220394146 NFE TRANSFAC yes 118461070
chr1 220394147 220394158 USF2 JASPAR yes 118461071
chr1 220394152 220394161 JDP2 JASPAR yes 118461072
chr1 220394157 220394175 IRF2 JASPAR yes 118461073
chr1 220394159 220394172 SMAD2 JASPAR yes 118461074
chr1 220394160 220394175 PRDM1 JASPAR yes 118461075
chr1 220394160 220394175 STAT2 JASPAR yes 118461076
chr1 220394192 220394198 MZF1 JASPAR yes 118461077
chr1 220394197 220394207 MAX JASPAR yes 118461078
chr1 220394198 220394208 MNT JASPAR yes 118461079
chr1 220394199 220394206 USF1 JASPAR yes 118461080
chr1 220394200 220394205 MYC TRANSFAC yes 118461081
chr1 220394200 220394205 USF1 TRANSFAC yes 118461082
chr1 220394200 220394205 USF2 TRANSFAC yes 118461083
chr1 220394200 220394207 USF1 JASPAR yes 118461084
chr1 220394202 220394212 ETV6 JASPAR yes 118461085
chr1 220394217 220394221 H1TF2 TRANSFAC yes 118461086
chr1 220394217 220394221 NFE TRANSFAC yes 118461087
chr1 220394217 220394221 SRF TRANSFAC yes 118461088
chr1 220394217 220394227 HOXA13 JASPAR yes 118461089
chr1 220394217 220394227 HOXB13 JASPAR yes 118461090
chr1 220394217 220394227 HOXD13 JASPAR yes 118461091
chr1 220394258 220394272 GATA2 JASPAR yes 118461092
chr1 220394262 220394277 MAFK JASPAR yes 118461093
chr1 220394273 220394286 POU2F2 JASPAR yes 118461094
chr1 220394287 220394290 MYB TRANSFAC yes 118461095
SNP sites on vista5154[chr1:220393912-220394294]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 220394160 rs146662339 A G
IRF2 JDP2 POLR2A PRDM1 SMAD2 STAT2
958902
chr1 220394190 rs140259595 G A
POLR2A
958903
chr1 220394203 rs190207749 C A,T
ETV6 MAX MNT MYC POLR2A USF1 USF2
958904
Genes possibly regulated by vista5154[chr1:220393912-220394294]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 220321635 220445796 - RAB3GAP2 ENSG00000118873.11 220445796 0.68 0.99 1856 48498
Expression level of Genes
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miRNAs possibly regulated by vista5154[chr1:220393912-220394294]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results