EnhancerDB
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  3. vista5421[chr1:228783266-228783899]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5421[chr1:228783266-228783899]
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Tissue distribution of vista5421
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Transcription factor that possibly regulate vista5421[chr1:228783266-228783899]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228782390 228784133 POLR2A UCSC Txn Factor no Conserved 107877212
chr1 228782390 228784133 POLR2A UCSC Txn Factor no Conserved 107877213
chr1 228782390 228784133 POLR2A UCSC Txn Factor no Conserved 107877214
chr1 228783293 228783313 PPARG JASPAR yes 35919192
chr1 228783293 228783313 PPARG JASPAR yes 118474210
chr1 228783304 228783310 NFE2 TRANSFAC yes 35919193
chr1 228783304 228783310 NFE2 TRANSFAC yes 118474211
chr1 228783306 228783327 ZNF263 JASPAR yes 35919194
chr1 228783306 228783327 ZNF263 JASPAR yes 118474212
chr1 228783310 228783319 THAP1 JASPAR yes 35919195
chr1 228783310 228783319 THAP1 JASPAR yes 118474213
chr1 228783311 228783328 RXRA JASPAR yes 35919196
chr1 228783311 228783328 RXRA JASPAR yes 118474214
chr1 228783312 228783319 SP1 TRANSFAC yes 35919197
chr1 228783312 228783319 SP1 TRANSFAC yes 118474215
chr1 228783313 228783320 SP1 TRANSFAC yes 35919198
chr1 228783313 228783320 SP1 TRANSFAC yes 118474216
chr1 228783314 228783319 SP1 TRANSFAC yes 35919199
chr1 228783314 228783319 SP1 TRANSFAC yes 118474217
chr1 228783314 228783320 SP1 TRANSFAC yes 35919200
chr1 228783314 228783320 SP1 TRANSFAC yes 118474218
chr1 228783315 228783330 NR2C2 JASPAR yes 35919201
chr1 228783315 228783330 NR2C2 JASPAR yes 118474219
chr1 228783317 228783327 SP1 JASPAR yes 35919202
chr1 228783317 228783327 SP1 JASPAR yes 118474220
chr1 228783318 228783328 SP1 JASPAR yes 35919203
chr1 228783318 228783328 SP1 JASPAR yes 118474221
chr1 228783332 228783336 TEAD2 TRANSFAC yes 35919204
chr1 228783332 228783336 TEAD2 TRANSFAC yes 118474222
chr1 228783362 228783367 MYB TRANSFAC yes 35919205
chr1 228783362 228783367 MYB TRANSFAC yes 118474223
chr1 228783374 228783395 ZNF263 JASPAR yes 35919206
chr1 228783374 228783395 ZNF263 JASPAR yes 118474224
chr1 228783375 228783381 ZNF354C JASPAR yes 35919207
chr1 228783375 228783381 ZNF354C JASPAR yes 118474225
chr1 228783376 228783387 SPDEF JASPAR yes 35919208
chr1 228783376 228783387 SPDEF JASPAR yes 118474226
chr1 228783384 228783395 E2F1 JASPAR yes 35919209
chr1 228783384 228783395 E2F1 JASPAR yes 118474227
chr1 228783385 228783396 E2F4 JASPAR yes 35919210
chr1 228783385 228783396 E2F6 JASPAR yes 35919211
chr1 228783385 228783396 E2F4 JASPAR yes 118474228
chr1 228783385 228783396 E2F6 JASPAR yes 118474229
chr1 228783389 228783394 ETS2 TRANSFAC yes 35919212
chr1 228783389 228783394 ETS2 TRANSFAC yes 118474230
chr1 228783439 228783449 SP1 JASPAR yes 35919213
chr1 228783439 228783449 SP1 JASPAR yes 118474231
chr1 228783457 228783468 SPDEF JASPAR yes 35919214
chr1 228783457 228783468 SPDEF JASPAR yes 118474232
chr1 228783459 228783469 TFCP2 JASPAR yes 35919215
chr1 228783459 228783469 TFCP2 JASPAR yes 118474233
chr1 228783481 228783486 SP1 TRANSFAC yes 35919216
chr1 228783481 228783486 SP1 TRANSFAC yes 118474234
chr1 228783495 228783506 TBX20 JASPAR yes 35919217
chr1 228783495 228783506 TBX20 JASPAR yes 118474235
chr1 228783530 228783544 GLIS3 JASPAR yes 35919218
chr1 228783530 228783544 GLIS3 JASPAR yes 118474236
chr1 228783545 228783549 H4TF2 TRANSFAC yes 35919219
chr1 228783545 228783549 H4TF2 TRANSFAC yes 118474237
chr1 228783570 228783583 EOMES JASPAR yes 35919220
chr1 228783570 228783583 EOMES JASPAR yes 118474238
chr1 228783571 228783581 TBR1 JASPAR yes 35919221
chr1 228783571 228783581 TBR1 JASPAR yes 118474239
chr1 228783631 228783642 E2F6 JASPAR yes 35919222
chr1 228783631 228783642 E2F6 JASPAR yes 118474240
chr1 228783636 228783642 PEA3 TRANSFAC yes 35919223
chr1 228783636 228783642 PEA3 TRANSFAC yes 118474241
chr1 228783650 228783658 FOXO3 JASPAR yes 35919224
chr1 228783650 228783658 FOXO3 JASPAR yes 118474242
chr1 228783678 228783687 NKX2-8 JASPAR yes 35919225
chr1 228783678 228783687 NKX2-8 JASPAR yes 118474243
chr1 228783678 228783688 NKX2-3 JASPAR yes 35919226
chr1 228783678 228783688 NKX2-3 JASPAR yes 118474244
chr1 228783717 228783731 GATA2 JASPAR yes 35919227
chr1 228783717 228783731 GATA2 JASPAR yes 118474245
chr1 228783721 228783729 GATA3 JASPAR yes 35919228
chr1 228783721 228783729 GATA3 JASPAR yes 118474246
chr1 228783732 228783747 LEF1 JASPAR yes 35919229
chr1 228783732 228783747 LEF1 JASPAR yes 118474247
chr1 228783752 228783764 TFAP2A JASPAR yes 35919230
chr1 228783752 228783764 TFAP2B JASPAR yes 35919231
chr1 228783752 228783764 TFAP2A JASPAR yes 118474248
chr1 228783752 228783764 TFAP2B JASPAR yes 118474249
chr1 228783768 228783782 NR2F1 JASPAR yes 35919232
chr1 228783768 228783782 NR2F1 JASPAR yes 118474250
chr1 228783793 228783797 NFE TRANSFAC yes 35919233
chr1 228783793 228783797 NFE TRANSFAC yes 118474251
chr1 228783797 228783803 NFE2 TRANSFAC yes 35919234
chr1 228783797 228783803 NFE2 TRANSFAC yes 118474252
chr1 228783798 228783811 TFAP2A JASPAR yes 35919235
chr1 228783798 228783811 TFAP2B JASPAR yes 35919236
chr1 228783798 228783811 TFAP2C JASPAR yes 35919237
chr1 228783798 228783811 TFAP2A JASPAR yes 118474253
chr1 228783798 228783811 TFAP2B JASPAR yes 118474254
chr1 228783798 228783811 TFAP2C JASPAR yes 118474255
chr1 228783821 228783826 SP1 TRANSFAC yes 35919238
chr1 228783821 228783826 SP1 TRANSFAC yes 118474256
chr1 228783851 228783858 POU2F1 TRANSFAC yes 35919239
chr1 228783851 228783858 POU2F1 TRANSFAC yes 118474257
chr1 228783862 228783867 TFAP2A TRANSFAC yes 35919240
chr1 228783862 228783867 TFAP2A TRANSFAC yes 118474258
chr1 228783862 228783868 MZF1 JASPAR yes 35919241
chr1 228783862 228783868 MZF1 JASPAR yes 118474259
chr1 228783887 228783906 REST JASPAR yes 35919242
chr1 228783887 228783906 REST JASPAR yes 118474260
SNP sites on vista5421[chr1:228783266-228783899]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228783329 rs12407568 G T
NR2C2 POLR2A
1003372
chr1 228783360 rs187913891 T G
POLR2A
1003373
chr1 228783474 rs56043220 G C
POLR2A
1003374
chr1 228783492 rs73109076 T A,G
POLR2A
1003375
chr1 228783629 rs190873604 G A
POLR2A
1003376
chr1 228783637 rs543430085 G A
E2F6 PEA3 POLR2A
1003377
chr1 228783657 rs371580371 C G
FOXO3 POLR2A
1003378
chr1 228783671 rs12046644 C T
POLR2A
1003379
chr1 228783812 rs547477208 C G
POLR2A
1003380
chr1 228783827 rs182895231 C G
POLR2A
1003381
chr1 228783862 rs144726491 A G
MZF1 POLR2A TFAP2A
1003382
chr1 228783882 rs538626639 C G
POLR2A
1003383
chr1 228783896 rs565615655 C T
POLR2A REST
1003384
Genes possibly regulated by vista5421[chr1:228783266-228783899]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228870824 228882416 + RHOU ENSG00000116574.4 228870824 0.7 0.97 1927 13075
Expression level of Genes
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miRNAs possibly regulated by vista5421[chr1:228783266-228783899]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results