EnhancerDB
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  3. vista5460[chr1:229339200-229339557]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5460[chr1:229339200-229339557]
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Tissue distribution of vista5460
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Transcription factor that possibly regulate vista5460[chr1:229339200-229339557]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 229339162 229339682 ATF2 UCSC Txn Factor no Conserved 107877826
chr1 229339173 229339629 JUND UCSC Txn Factor no Conserved 107877828
chr1 229339225 229339555 CHD2 UCSC Txn Factor no Conserved 107877833
chr1 229339248 229339548 SP1 UCSC Txn Factor no Conserved 107877836
chr1 229339270 229339510 SP2 UCSC Txn Factor no Conserved 107877841
chr1 229339192 229339203 FOXH1 JASPAR yes 35973856
chr1 229339192 229339203 FOXH1 JASPAR yes 118475864
chr1 229339250 229339255 MYC TRANSFAC yes 35973857
chr1 229339250 229339255 MYC TRANSFAC yes 118475865
chr1 229339269 229339274 GATA2 JASPAR yes 35973858
chr1 229339269 229339274 GATA2 JASPAR yes 118475866
chr1 229339276 229339285 SOX9 JASPAR yes 35973859
chr1 229339276 229339285 SOX9 JASPAR yes 118475867
chr1 229339292 229339311 CTCF JASPAR yes 35973860
chr1 229339292 229339311 CTCF JASPAR yes 118475868
chr1 229339294 229339298 NFE TRANSFAC yes 35973861
chr1 229339294 229339298 NFE TRANSFAC yes 118475869
chr1 229339296 229339311 TFAP2C JASPAR yes 35973862
chr1 229339296 229339311 TFAP2C JASPAR yes 118475870
chr1 229339301 229339316 NFYB JASPAR yes 35973863
chr1 229339301 229339316 NFYB JASPAR yes 118475871
chr1 229339303 229339319 NFYA JASPAR yes 35973864
chr1 229339303 229339319 NFYA JASPAR yes 118475872
chr1 229339304 229339322 NFYA JASPAR yes 35973865
chr1 229339304 229339322 NFYA JASPAR yes 118475873
chr1 229339308 229339312 H1TF2 TRANSFAC yes 35973866
chr1 229339308 229339312 NFE TRANSFAC yes 35973867
chr1 229339308 229339312 SRF TRANSFAC yes 35973868
chr1 229339308 229339312 H1TF2 TRANSFAC yes 118475874
chr1 229339308 229339312 NFE TRANSFAC yes 118475875
chr1 229339308 229339312 SRF TRANSFAC yes 118475876
chr1 229339325 229339337 PKNOX1 JASPAR yes 35973869
chr1 229339325 229339337 PKNOX2 JASPAR yes 35973870
chr1 229339325 229339337 TGIF1 JASPAR yes 35973871
chr1 229339325 229339337 PKNOX1 JASPAR yes 118475877
chr1 229339325 229339337 PKNOX2 JASPAR yes 118475878
chr1 229339325 229339337 TGIF1 JASPAR yes 118475879
chr1 229339344 229339354 SP1 JASPAR yes 35973872
chr1 229339344 229339354 SP1 JASPAR yes 118475880
chr1 229339348 229339366 ESR1 JASPAR yes 35973873
chr1 229339348 229339366 ESR1 JASPAR yes 118475881
chr1 229339351 229339366 HNF4A JASPAR yes 35973874
chr1 229339351 229339366 HNF4A JASPAR yes 118475882
chr1 229339384 229339399 JUND JASPAR yes 35973875
chr1 229339384 229339399 JUND JASPAR yes 118475883
chr1 229339385 229339398 JUN JASPAR yes 35973876
chr1 229339385 229339398 JUN JASPAR yes 118475884
chr1 229339386 229339400 ATF7 JASPAR yes 35973877
chr1 229339386 229339400 BATF3 JASPAR yes 35973878
chr1 229339386 229339400 ATF7 JASPAR yes 118475885
chr1 229339386 229339400 BATF3 JASPAR yes 118475886
chr1 229339387 229339399 JDP2 JASPAR yes 35973879
chr1 229339387 229339399 JDP2 JASPAR yes 118475887
chr1 229339387 229339402 JUND JASPAR yes 35973880
chr1 229339387 229339402 JUND JASPAR yes 118475888
chr1 229339403 229339407 H1TF2 TRANSFAC yes 35973881
chr1 229339403 229339407 NFE TRANSFAC yes 35973882
chr1 229339403 229339407 SRF TRANSFAC yes 35973883
chr1 229339403 229339407 H1TF2 TRANSFAC yes 118475889
chr1 229339403 229339407 NFE TRANSFAC yes 118475890
chr1 229339403 229339407 SRF TRANSFAC yes 118475891
chr1 229339407 229339418 FOXH1 JASPAR yes 35973884
chr1 229339407 229339418 FOXH1 JASPAR yes 118475892
chr1 229339409 229339427 NFYA JASPAR yes 35973885
chr1 229339409 229339427 NFYA JASPAR yes 118475893
chr1 229339412 229339428 NFYA JASPAR yes 35973886
chr1 229339412 229339428 NFYA JASPAR yes 118475894
chr1 229339415 229339430 NFYB JASPAR yes 35973887
chr1 229339415 229339430 NFYB JASPAR yes 118475895
chr1 229339446 229339450 H1TF2 TRANSFAC yes 35973888
chr1 229339446 229339450 NFE TRANSFAC yes 35973889
chr1 229339446 229339450 SRF TRANSFAC yes 35973890
chr1 229339446 229339450 H1TF2 TRANSFAC yes 118475896
chr1 229339446 229339450 NFE TRANSFAC yes 118475897
chr1 229339446 229339450 SRF TRANSFAC yes 118475898
chr1 229339450 229339467 BCL6B JASPAR yes 35973891
chr1 229339450 229339467 BCL6B JASPAR yes 118475899
chr1 229339486 229339496 TBR1 JASPAR yes 35973892
chr1 229339486 229339496 TBR1 JASPAR yes 118475900
chr1 229339499 229339510 NFKB1 JASPAR yes 35973893
chr1 229339499 229339510 NFKB1 JASPAR yes 118475901
chr1 229339505 229339521 ZNF143 JASPAR yes 35973894
chr1 229339505 229339521 ZNF143 JASPAR yes 118475902
chr1 229339509 229339518 PITX3 JASPAR yes 35973895
chr1 229339509 229339518 PITX3 JASPAR yes 118475903
chr1 229339509 229339519 GSC2 JASPAR yes 35973896
chr1 229339509 229339519 GSC JASPAR yes 35973897
chr1 229339509 229339519 GSC2 JASPAR yes 118475904
chr1 229339509 229339519 GSC JASPAR yes 118475905
chr1 229339510 229339518 OTX1 JASPAR yes 35973898
chr1 229339510 229339518 OTX2 JASPAR yes 35973899
chr1 229339510 229339518 RHOXF1 JASPAR yes 35973900
chr1 229339510 229339518 OTX1 JASPAR yes 118475906
chr1 229339510 229339518 OTX2 JASPAR yes 118475907
chr1 229339510 229339518 RHOXF1 JASPAR yes 118475908
SNP sites on vista5460[chr1:229339200-229339557]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 229339307 rs10916446 G A
ATF2 CHD2 CTCF JUND NFYA NFYB SP1 SP2 TFAP2C
1009183
chr1 229339399 rs545154336 T G
ATF2 ATF7 BATF3 CHD2 JDP2 JUND SP1 SP2
1009184
Genes possibly regulated by vista5460[chr1:229339200-229339557]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 229385383 229387557 + TMEM78 ENSG00000177800.2 229385383 0.93 0.96 1928 54174
chr1 229406822 229441641 + RAB4A ENSG00000168118.7 229406822 0.61 1.0 1929 32735
Expression level of Genes
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miRNAs possibly regulated by vista5460[chr1:229339200-229339557]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results