EnhancerDB
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  3. vista5473[chr1:229547907-229548085]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5473[chr1:229547907-229548085]
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Tissue distribution of vista5473
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Transcription factor that possibly regulate vista5473[chr1:229547907-229548085]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 229547977 229548157 FOXA1 UCSC Txn Factor no Conserved 107878156
chr1 229547983 229548171 GATA3 UCSC Txn Factor no Conserved 107878157
chr1 229547905 229547920 HSF1 JASPAR yes 35987449
chr1 229547905 229547920 HSF1 JASPAR yes 118476746
chr1 229547960 229547968 EHF JASPAR yes 35987450
chr1 229547960 229547968 EHF JASPAR yes 118476747
chr1 229547966 229547984 NFYA JASPAR yes 35987451
chr1 229547966 229547984 NFYA JASPAR yes 118476748
chr1 229547969 229547985 NFYA JASPAR yes 35987452
chr1 229547969 229547985 NFYA JASPAR yes 118476749
chr1 229547974 229547979 NFY TRANSFAC yes 35987453
chr1 229547974 229547979 NFY TRANSFAC yes 118476750
chr1 229547978 229547982 ESR1 TRANSFAC yes 35987454
chr1 229547978 229547982 ESR1 TRANSFAC yes 118476751
chr1 229547986 229547990 NFE TRANSFAC yes 35987455
chr1 229547986 229547990 NFE TRANSFAC yes 118476752
chr1 229548001 229548007 SP1 TRANSFAC yes 35987456
chr1 229548001 229548007 SP1 TRANSFAC yes 118476753
chr1 229548007 229548013 LEF1 TRANSFAC yes 35987457
chr1 229548007 229548013 SOX10 JASPAR yes 35987458
chr1 229548007 229548013 LEF1 TRANSFAC yes 118476754
chr1 229548007 229548013 SOX10 JASPAR yes 118476755
chr1 229548015 229548025 TBX21 JASPAR yes 35987459
chr1 229548015 229548025 TBX21 JASPAR yes 118476756
chr1 229548015 229548026 TBX2 JASPAR yes 35987460
chr1 229548015 229548026 TBX2 JASPAR yes 118476757
chr1 229548015 229548028 EOMES JASPAR yes 35987461
chr1 229548015 229548028 EOMES JASPAR yes 118476758
chr1 229548016 229548026 TBR1 JASPAR yes 35987462
chr1 229548016 229548026 TBR1 JASPAR yes 118476759
chr1 229548051 229548063 FOXI1 JASPAR yes 35987463
chr1 229548051 229548063 FOXI1 JASPAR yes 118476760
chr1 229548052 229548072 RREB1 JASPAR yes 35987464
chr1 229548052 229548072 RREB1 JASPAR yes 118476761
chr1 229548054 229548058 YY1 TRANSFAC yes 35987465
chr1 229548054 229548058 YY1 TRANSFAC yes 118476762
chr1 229548079 229548098 PAX5 JASPAR yes 35987466
chr1 229548079 229548098 PAX5 JASPAR yes 118476763
SNP sites on vista5473[chr1:229547907-229548085]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 229547910 rs146529679 C T
HSF1
1010658
chr1 229547926 rs543181329 A G no 1010659
chr1 229547970 rs375384768 C T
NFYA
1010660
chr1 229547990 rs546267052 T C
FOXA1 GATA3 NFE
1010661
chr1 229548009 rs528464193 T C
FOXA1 GATA3 LEF1 SOX10
1010662
Genes possibly regulated by vista5473[chr1:229547907-229548085]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 229456758 229479041 - CCSAP ENSG00000154429.6 229479041 0.85 0.99 1931 31134
chr1 229566992 229569845 - ACTA1 ENSG00000143632.10 229569845 1.0 0.94 1932 78240
chr1 229577045 229644103 - NUP133 ENSG00000069248.9 229644103 0.58 0.99 1933 3982
Expression level of Genes
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miRNAs possibly regulated by vista5473[chr1:229547907-229548085]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results