EnhancerDB
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  3. vista943[chr1:27971483-27971662]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista943[chr1:27971483-27971662]
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Tissue distribution of vista943
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Transcription factor that possibly regulate vista943[chr1:27971483-27971662]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 27971474 27971491 ZNF410 JASPAR yes 27717530
chr1 27971474 27971491 ZNF410 JASPAR yes 118259815
chr1 27971556 27971569 NFKB2 JASPAR yes 27717531
chr1 27971556 27971569 NFKB2 JASPAR yes 118259816
chr1 27971562 27971567 GATA2 JASPAR yes 27717532
chr1 27971562 27971567 GATA2 JASPAR yes 118259817
chr1 27971562 27971576 EBF1 JASPAR yes 27717533
chr1 27971562 27971576 EBF1 JASPAR yes 118259818
chr1 27971564 27971575 EBF1 JASPAR yes 27717534
chr1 27971564 27971575 EBF1 JASPAR yes 118259819
chr1 27971564 27971579 ZIC3 JASPAR yes 27717535
chr1 27971564 27971579 ZIC3 JASPAR yes 118259820
chr1 27971582 27971588 NFIC JASPAR yes 27717536
chr1 27971582 27971588 NFIC JASPAR yes 118259821
chr1 27971586 27971592 HiNF-A TRANSFAC yes 27717537
chr1 27971586 27971592 HiNF-A TRANSFAC yes 118259822
chr1 27971590 27971596 SOX10 JASPAR yes 27717538
chr1 27971590 27971596 SOX10 JASPAR yes 118259823
chr1 27971597 27971612 ESR2 JASPAR yes 27717539
chr1 27971597 27971612 ESR2 JASPAR yes 118259824
chr1 27971598 27971602 LFA1 TRANSFAC yes 27717540
chr1 27971598 27971602 LFA1 TRANSFAC yes 118259825
chr1 27971615 27971634 REST JASPAR yes 27717541
chr1 27971615 27971634 REST JASPAR yes 118259826
chr1 27971618 27971622 NFE TRANSFAC yes 27717542
chr1 27971618 27971622 NFE TRANSFAC yes 118259827
chr1 27971621 27971632 EBF1 JASPAR yes 27717543
chr1 27971621 27971632 EBF1 JASPAR yes 118259828
chr1 27971626 27971631 SP1 TRANSFAC yes 27717544
chr1 27971626 27971631 SP1 TRANSFAC yes 118259829
chr1 27971647 27971661 RORA JASPAR yes 27717545
chr1 27971647 27971661 RORA JASPAR yes 118259830
chr1 27971661 27971681 ESR1 JASPAR yes 27717546
chr1 27971661 27971681 ESR1 JASPAR yes 118259831
chr1 27971662 27971673 NFE2L2 JASPAR yes 27717547
chr1 27971662 27971673 NFE2L2 JASPAR yes 118259832
SNP sites on vista943[chr1:27971483-27971662]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 27971500 rs148821696 C G,T no 187653
chr1 27971502 rs1292081 A G no 187654
chr1 27971508 rs574428874 C A no 187655
chr1 27971516 rs190629948 T C no 187656
chr1 27971525 rs2308225 TGCTAGGCTCTGCCTAC T no 187657
chr1 27971525 rs72191132 TGCTAGGCTCTGCCTAC T no 187658
chr1 27971540 rs553400962 A T no 187659
chr1 27971541 rs183543748 C T no 187660
chr1 27971566 rs542470944 C T
EBF1 GATA2 NFKB2 ZIC3
187661
Genes possibly regulated by vista943[chr1:27971483-27971662]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 27860546 27930942 - AHDC1 ENSG00000126705.9 27930942 0.75 1.0 393 59459
chr1 27938575 27961788 - FGR ENSG00000000938.8 27961788 0.93 0.97 394 90305
chr1 27992572 27998729 - IFI6 ENSG00000126709.10 27998729 0.76 1.0 395 72933
chr1 28052490 28089633 + FAM76A ENSG00000009780.11 28052490 0.57 0.99 396 19172
Expression level of Genes
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miRNAs possibly regulated by vista943[chr1:27971483-27971662]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results