EnhancerDB
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  3. rs542470944[chr1:27971566]
Enhancers that have rs542470944[chr1:27971566]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27968485 27992074 enh178
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr1 27971483 27971662 vista943
VISTA
Transcript factors that have rs542470944[chr1:27971566]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27970755 27972330 AR GTRD no Prostate (PC-3) 107802608
chr1 27971556 27971569 NFKB2 JASPAR yes 27717531
chr1 27971556 27971569 NFKB2 JASPAR yes 118259816
chr1 27971562 27971567 GATA2 JASPAR yes 27717532
chr1 27971562 27971567 GATA2 JASPAR yes 118259817
chr1 27971562 27971576 EBF1 JASPAR yes 27717533
chr1 27971562 27971576 EBF1 JASPAR yes 118259818
chr1 27971564 27971575 EBF1 JASPAR yes 27717534
chr1 27971564 27971575 EBF1 JASPAR yes 118259819
chr1 27971564 27971579 ZIC3 JASPAR yes 27717535
chr1 27971564 27971579 ZIC3 JASPAR yes 118259820
Genes associated with rs542470944[chr1:27971566], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More