EnhancerDB
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  3. vista956[chr1:28189568-28190269]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista956[chr1:28189568-28190269]
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Tissue distribution of vista956
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Transcription factor that possibly regulate vista956[chr1:28189568-28190269]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28189433 28190210 POLR2A UCSC Txn Factor no Conserved 107802620
chr1 28189585 28189588 MYB TRANSFAC yes 27728405
chr1 28189585 28189588 MYB TRANSFAC yes 118260391
chr1 28189588 28189594 NFE2 TRANSFAC yes 27728406
chr1 28189588 28189594 NFE2 TRANSFAC yes 118260392
chr1 28189591 28189597 SP1 TRANSFAC yes 27728407
chr1 28189591 28189597 SP1 TRANSFAC yes 118260393
chr1 28189604 28189610 NFIC JASPAR yes 27728408
chr1 28189604 28189610 NFIC JASPAR yes 118260394
chr1 28189607 28189619 YY1 JASPAR yes 27728409
chr1 28189607 28189619 YY1 JASPAR yes 118260395
chr1 28189610 28189616 YY1 JASPAR yes 27728410
chr1 28189610 28189616 YY1 JASPAR yes 118260396
chr1 28189613 28189626 EOMES JASPAR yes 27728411
chr1 28189613 28189626 EOMES JASPAR yes 118260397
chr1 28189615 28189625 TBR1 JASPAR yes 27728412
chr1 28189615 28189625 TBR1 JASPAR yes 118260398
chr1 28189615 28189626 TBX20 JASPAR yes 27728413
chr1 28189615 28189626 TBX2 JASPAR yes 27728414
chr1 28189615 28189626 TBX20 JASPAR yes 118260399
chr1 28189615 28189626 TBX2 JASPAR yes 118260400
chr1 28189616 28189626 TBX21 JASPAR yes 27728415
chr1 28189616 28189626 TBX21 JASPAR yes 118260401
chr1 28189617 28189625 MGA JASPAR yes 27728416
chr1 28189617 28189625 TBX15 JASPAR yes 27728417
chr1 28189617 28189625 TBX1 JASPAR yes 27728418
chr1 28189617 28189625 TBX4 JASPAR yes 27728419
chr1 28189617 28189625 TBX5 JASPAR yes 27728420
chr1 28189617 28189625 MGA JASPAR yes 118260402
chr1 28189617 28189625 TBX15 JASPAR yes 118260403
chr1 28189617 28189625 TBX1 JASPAR yes 118260404
chr1 28189617 28189625 TBX4 JASPAR yes 118260405
chr1 28189617 28189625 TBX5 JASPAR yes 118260406
chr1 28189629 28189642 EOMES JASPAR yes 27728421
chr1 28189629 28189642 EOMES JASPAR yes 118260407
chr1 28189631 28189641 TBR1 JASPAR yes 27728422
chr1 28189631 28189641 TBR1 JASPAR yes 118260408
chr1 28189631 28189642 TBX20 JASPAR yes 27728423
chr1 28189631 28189642 TBX2 JASPAR yes 27728424
chr1 28189631 28189642 TBX20 JASPAR yes 118260409
chr1 28189631 28189642 TBX2 JASPAR yes 118260410
chr1 28189632 28189642 TBX21 JASPAR yes 27728425
chr1 28189632 28189642 TBX21 JASPAR yes 118260411
chr1 28189633 28189641 MGA JASPAR yes 27728426
chr1 28189633 28189641 MGA JASPAR yes 118260412
chr1 28189634 28189649 RUNX2 JASPAR yes 27728427
chr1 28189634 28189649 RUNX2 JASPAR yes 118260413
chr1 28189646 28189660 POU1F1 JASPAR yes 27728428
chr1 28189646 28189660 POU1F1 JASPAR yes 118260414
chr1 28189648 28189652 YY1 TRANSFAC yes 27728429
chr1 28189648 28189652 YY1 TRANSFAC yes 118260415
chr1 28189651 28189664 DUXA JASPAR yes 27728430
chr1 28189651 28189664 DUXA JASPAR yes 118260416
chr1 28189652 28189658 JUN TRANSFAC yes 27728431
chr1 28189652 28189658 JUN TRANSFAC yes 118260417
chr1 28189652 28189663 DUX4 JASPAR yes 27728432
chr1 28189652 28189663 DUX4 JASPAR yes 118260418
chr1 28189653 28189665 PBX1 JASPAR yes 27728433
chr1 28189653 28189665 PBX1 JASPAR yes 118260419
chr1 28189671 28189677 MZF1 JASPAR yes 27728434
chr1 28189671 28189677 MZF1 JASPAR yes 118260420
chr1 28189706 28189710 H4TF2 TRANSFAC yes 27728435
chr1 28189706 28189710 H4TF2 TRANSFAC yes 118260421
chr1 28189706 28189723 PAX1 JASPAR yes 27728436
chr1 28189706 28189723 PAX1 JASPAR yes 118260422
chr1 28189707 28189726 PAX5 JASPAR yes 27728437
chr1 28189707 28189726 PAX5 JASPAR yes 118260423
chr1 28189711 28189730 PAX5 JASPAR yes 27728438
chr1 28189711 28189730 PAX5 JASPAR yes 118260424
chr1 28189744 28189765 IRF1 JASPAR yes 27728439
chr1 28189744 28189765 IRF1 JASPAR yes 118260425
chr1 28189746 28189761 STAT2 JASPAR yes 27728440
chr1 28189746 28189761 STAT2 JASPAR yes 118260426
chr1 28189747 28189761 STAT1 JASPAR yes 27728441
chr1 28189747 28189761 STAT1 JASPAR yes 118260427
chr1 28189748 28189760 IRF1 JASPAR yes 27728442
chr1 28189748 28189760 IRF1 JASPAR yes 118260428
chr1 28189757 28189763 MZF1 JASPAR yes 27728443
chr1 28189757 28189763 MZF1 JASPAR yes 118260429
chr1 28189767 28189788 ZNF263 JASPAR yes 27728444
chr1 28189767 28189788 ZNF263 JASPAR yes 118260430
chr1 28189779 28189790 E2F6 JASPAR yes 27728445
chr1 28189779 28189790 E2F6 JASPAR yes 118260431
chr1 28189793 28189811 RARA JASPAR yes 27728446
chr1 28189793 28189811 RARA JASPAR yes 118260432
chr1 28189804 28189818 RXRB JASPAR yes 27728447
chr1 28189804 28189818 RXRG JASPAR yes 27728448
chr1 28189804 28189818 RXRB JASPAR yes 118260433
chr1 28189804 28189818 RXRG JASPAR yes 118260434
chr1 28189804 28189821 RARA JASPAR yes 27728449
chr1 28189804 28189821 RXRA JASPAR yes 27728450
chr1 28189804 28189821 RARA JASPAR yes 118260435
chr1 28189804 28189821 RXRA JASPAR yes 118260436
chr1 28189809 28189820 FOSL1 JASPAR yes 27728451
chr1 28189809 28189820 FOSL1 JASPAR yes 118260437
chr1 28189810 28189821 JUNB JASPAR yes 27728452
chr1 28189810 28189821 JUNB JASPAR yes 118260438
chr1 28189810 28189827 PAX9 JASPAR yes 27728453
chr1 28189810 28189827 PAX9 JASPAR yes 118260439
chr1 28189815 28189829 RXRG JASPAR yes 27728454
chr1 28189815 28189829 RXRG JASPAR yes 118260440
chr1 28189822 28189833 FLI1 JASPAR yes 27728455
chr1 28189822 28189833 FLI1 JASPAR yes 118260441
chr1 28189824 28189831 SPI1 JASPAR yes 27728456
chr1 28189824 28189831 SPI1 JASPAR yes 118260442
chr1 28189824 28189832 EHF JASPAR yes 27728457
chr1 28189824 28189832 EHF JASPAR yes 118260443
chr1 28189825 28189845 TP53 JASPAR yes 27728458
chr1 28189825 28189845 TP53 JASPAR yes 118260444
chr1 28189826 28189833 SPIB JASPAR yes 27728459
chr1 28189826 28189833 SPIB JASPAR yes 118260445
chr1 28189833 28189837 LFA1 TRANSFAC yes 27728460
chr1 28189833 28189837 LFA1 TRANSFAC yes 118260446
chr1 28189874 28189885 CEBPA JASPAR yes 27728461
chr1 28189874 28189885 CEBPA JASPAR yes 118260447
chr1 28189883 28189896 EOMES JASPAR yes 27728462
chr1 28189883 28189896 EOMES JASPAR yes 118260448
chr1 28189885 28189896 TBX20 JASPAR yes 27728463
chr1 28189885 28189896 TBX20 JASPAR yes 118260449
chr1 28189886 28189896 TBX21 JASPAR yes 27728464
chr1 28189886 28189896 TBX21 JASPAR yes 118260450
chr1 28189887 28189895 MGA JASPAR yes 27728465
chr1 28189887 28189895 TBX15 JASPAR yes 27728466
chr1 28189887 28189895 TBX1 JASPAR yes 27728467
chr1 28189887 28189895 TBX4 JASPAR yes 27728468
chr1 28189887 28189895 TBX5 JASPAR yes 27728469
chr1 28189887 28189895 MGA JASPAR yes 118260451
chr1 28189887 28189895 TBX15 JASPAR yes 118260452
chr1 28189887 28189895 TBX1 JASPAR yes 118260453
chr1 28189887 28189895 TBX4 JASPAR yes 118260454
chr1 28189887 28189895 TBX5 JASPAR yes 118260455
chr1 28189923 28189939 SOX8 JASPAR yes 27728470
chr1 28189923 28189939 SOX8 JASPAR yes 118260456
chr1 28189935 28189950 STAT1 JASPAR yes 27728471
chr1 28189935 28189950 STAT1 JASPAR yes 118260457
chr1 28189935 28189954 RFX2 JASPAR yes 27728472
chr1 28189935 28189954 RFX2 JASPAR yes 118260458
chr1 28189937 28189948 STAT1 JASPAR yes 27728473
chr1 28189937 28189948 STAT3 JASPAR yes 27728474
chr1 28189937 28189948 STAT1 JASPAR yes 118260459
chr1 28189937 28189948 STAT3 JASPAR yes 118260460
chr1 28189937 28189952 RFX5 JASPAR yes 27728475
chr1 28189937 28189952 RFX5 JASPAR yes 118260461
chr1 28189973 28189994 REST JASPAR yes 27728476
chr1 28189973 28189994 REST JASPAR yes 118260462
chr1 28189974 28189993 REST JASPAR yes 27728477
chr1 28189974 28189993 REST JASPAR yes 118260463
chr1 28189996 28190001 MYB TRANSFAC yes 27728478
chr1 28189996 28190001 MYB TRANSFAC yes 118260464
chr1 28190005 28190009 YY1 TRANSFAC yes 27728479
chr1 28190005 28190009 YY1 TRANSFAC yes 118260465
chr1 28190013 28190034 ZNF263 JASPAR yes 27728480
chr1 28190013 28190034 ZNF263 JASPAR yes 118260466
chr1 28190016 28190037 ZNF263 JASPAR yes 27728481
chr1 28190016 28190037 ZNF263 JASPAR yes 118260467
chr1 28190022 28190027 ETS2 TRANSFAC yes 27728482
chr1 28190022 28190027 ETS2 TRANSFAC yes 118260468
chr1 28190027 28190034 SPIB JASPAR yes 27728483
chr1 28190027 28190034 SPIB JASPAR yes 118260469
chr1 28190037 28190041 H4TF2 TRANSFAC yes 27728484
chr1 28190037 28190041 H4TF2 TRANSFAC yes 118260470
chr1 28190049 28190055 NFE2 TRANSFAC yes 27728485
chr1 28190049 28190055 NFE2 TRANSFAC yes 118260471
chr1 28190055 28190059 YY1 TRANSFAC yes 27728486
chr1 28190055 28190059 YY1 TRANSFAC yes 118260472
chr1 28190060 28190065 SP1 TRANSFAC yes 27728487
chr1 28190060 28190065 SP1 TRANSFAC yes 118260473
chr1 28190063 28190067 LFA1 TRANSFAC yes 27728488
chr1 28190063 28190067 LFA1 TRANSFAC yes 118260474
chr1 28190076 28190090 ZIC1 JASPAR yes 27728489
chr1 28190076 28190090 ZIC1 JASPAR yes 118260475
chr1 28190080 28190095 RUNX2 JASPAR yes 27728490
chr1 28190080 28190095 RUNX2 JASPAR yes 118260476
chr1 28190084 28190094 RUNX3 JASPAR yes 27728491
chr1 28190084 28190094 RUNX3 JASPAR yes 118260477
chr1 28190085 28190094 RUNX2 JASPAR yes 27728492
chr1 28190085 28190094 RUNX2 JASPAR yes 118260478
chr1 28190111 28190121 FIGLA JASPAR yes 27728493
chr1 28190111 28190121 FIGLA JASPAR yes 118260479
chr1 28190126 28190135 PITX3 JASPAR yes 27728494
chr1 28190126 28190135 PITX3 JASPAR yes 118260480
chr1 28190126 28190136 GSC2 JASPAR yes 27728495
chr1 28190126 28190136 GSC JASPAR yes 27728496
chr1 28190126 28190136 GSC2 JASPAR yes 118260481
chr1 28190126 28190136 GSC JASPAR yes 118260482
chr1 28190127 28190135 OTX1 JASPAR yes 27728497
chr1 28190127 28190135 OTX2 JASPAR yes 27728498
chr1 28190127 28190135 RHOXF1 JASPAR yes 27728499
chr1 28190127 28190135 OTX1 JASPAR yes 118260483
chr1 28190127 28190135 OTX2 JASPAR yes 118260484
chr1 28190127 28190135 RHOXF1 JASPAR yes 118260485
chr1 28190131 28190137 MZF1 JASPAR yes 27728500
chr1 28190131 28190137 MZF1 JASPAR yes 118260486
chr1 28190148 28190159 DUX4 JASPAR yes 27728501
chr1 28190148 28190159 DUX4 JASPAR yes 118260487
chr1 28190149 28190155 YY1 JASPAR yes 27728502
chr1 28190149 28190155 YY1 JASPAR yes 118260488
chr1 28190154 28190158 YY1 TRANSFAC yes 27728503
chr1 28190154 28190158 YY1 TRANSFAC yes 118260489
chr1 28190180 28190184 YY1 TRANSFAC yes 27728504
chr1 28190180 28190184 YY1 TRANSFAC yes 118260490
chr1 28190184 28190194 GSC2 JASPAR yes 27728505
chr1 28190184 28190194 GSC2 JASPAR yes 118260491
chr1 28190185 28190193 OTX2 JASPAR yes 27728506
chr1 28190185 28190193 OTX2 JASPAR yes 118260492
chr1 28190185 28190198 DUXA JASPAR yes 27728507
chr1 28190185 28190198 DUXA JASPAR yes 118260493
chr1 28190193 28190203 SREBF2 JASPAR yes 27728508
chr1 28190193 28190203 SREBF2 JASPAR yes 118260494
chr1 28190197 28190201 ESR1 TRANSFAC yes 27728509
chr1 28190197 28190201 ESR1 TRANSFAC yes 118260495
chr1 28190206 28190211 SP1 TRANSFAC yes 27728510
chr1 28190206 28190211 SP1 TRANSFAC yes 118260496
chr1 28190209 28190214 SP1 TRANSFAC yes 27728511
chr1 28190209 28190214 SP1 TRANSFAC yes 118260497
chr1 28190220 28190224 ESR1 TRANSFAC yes 27728512
chr1 28190220 28190224 ESR1 TRANSFAC yes 118260498
chr1 28190233 28190244 HOXC13 JASPAR yes 27728513
chr1 28190233 28190244 HOXC13 JASPAR yes 118260499
chr1 28190233 28190248 STAT1 JASPAR yes 27728514
chr1 28190233 28190248 STAT1 JASPAR yes 118260500
chr1 28190240 28190254 SPI1 JASPAR yes 27728515
chr1 28190240 28190254 SPIC JASPAR yes 27728516
chr1 28190240 28190254 SPI1 JASPAR yes 118260501
chr1 28190240 28190254 SPIC JASPAR yes 118260502
chr1 28190241 28190254 ELF1 JASPAR yes 27728517
chr1 28190241 28190254 ELF1 JASPAR yes 118260503
chr1 28190244 28190251 SPIB JASPAR yes 27728518
chr1 28190244 28190251 SPIB JASPAR yes 118260504
chr1 28190244 28190254 GABPA JASPAR yes 27728519
chr1 28190244 28190254 GABPA JASPAR yes 118260505
chr1 28190263 28190270 MEIS1 JASPAR yes 27728520
chr1 28190263 28190270 MEIS1 JASPAR yes 118260506
chr1 28190263 28190271 MEIS2 JASPAR yes 27728521
chr1 28190263 28190271 MEIS3 JASPAR yes 27728522
chr1 28190263 28190271 MEIS2 JASPAR yes 118260507
chr1 28190263 28190271 MEIS3 JASPAR yes 118260508
SNP sites on vista956[chr1:28189568-28190269]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28189682 rs138457181 G A
POLR2A
188644
chr1 28189694 rs143960578 C T
POLR2A
188645
chr1 28189698 rs76901836 G C
POLR2A
188646
chr1 28189712 rs12409289 C T
PAX1 PAX5 POLR2A
188647
chr1 28189900 rs542364696 T C
POLR2A
188648
chr1 28189954 rs114770189 C A
POLR2A RFX2
188649
chr1 28189987 rs187803066 A G
POLR2A REST
188650
chr1 28190227 rs148365746 C T no 188651
Genes possibly regulated by vista956[chr1:28189568-28190269]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28099694 28150963 + STX12 ENSG00000117758.9 28099694 0.77 0.99 397 10126
chr1 28157289 28178187 + PPP1R8 ENSG00000117751.13 28157289 0.57 0.99 398 67721
chr1 28177085 28177255 - AL109927.1 ENSG00000268552.1 28177255 0.0 1.0 399 87687
chr1 28199055 28213196 + THEMIS2 ENSG00000130775.11 28199055 0.93 1.0 400 91214
chr1 28218035 28241257 - RPA2 ENSG00000117748.5 28241257 0.76 0.99 401 49012
chr1 28261504 28285668 + SMPDL3B ENSG00000130768.10 28261504 0.87 1.0 402 28765
chr1 28285973 28294607 + XKR8 ENSG00000158156.7 28285973 0.65 1.0 403 4296
Expression level of Genes
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miRNAs possibly regulated by vista956[chr1:28189568-28190269]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results