EnhancerDB
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  3. rs12409289[chr1:28189712]
Enhancers that have rs12409289[chr1:28189712]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28182518 28193279 enh179
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Thyroid Blood (Karpas-422) Lung (PC-9) Pancreas Blood (T-cell) Epithelial (MCF-7)
chr1 28189568 28190269 vista956
VISTA
Transcript factors that have rs12409289[chr1:28189712]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28189433 28190210 POLR2A UCSC Txn Factor no Conserved 107802620
chr1 28189706 28189723 PAX1 JASPAR yes 27728436
chr1 28189706 28189723 PAX1 JASPAR yes 118260422
chr1 28189707 28189726 PAX5 JASPAR yes 27728437
chr1 28189707 28189726 PAX5 JASPAR yes 118260423
chr1 28189711 28189730 PAX5 JASPAR yes 27728438
chr1 28189711 28189730 PAX5 JASPAR yes 118260424
Genes associated with rs12409289[chr1:28189712], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More