EnhancerDB
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  3. vista994[chr1:28500052-28500411]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista994[chr1:28500052-28500411]
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Tissue distribution of vista994
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Transcription factor that possibly regulate vista994[chr1:28500052-28500411]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28500063 28500071 TBX15 JASPAR yes 27749918
chr1 28500063 28500071 TBX15 JASPAR yes 118262424
chr1 28500063 28500074 E2F6 JASPAR yes 27749919
chr1 28500063 28500074 E2F6 JASPAR yes 118262425
chr1 28500064 28500069 SP1 TRANSFAC yes 27749920
chr1 28500064 28500069 SP1 TRANSFAC yes 118262426
chr1 28500105 28500115 TBX21 JASPAR yes 27749921
chr1 28500105 28500115 TBX21 JASPAR yes 118262427
chr1 28500105 28500116 TBX20 JASPAR yes 27749922
chr1 28500105 28500116 TBX2 JASPAR yes 27749923
chr1 28500105 28500116 TBX20 JASPAR yes 118262428
chr1 28500105 28500116 TBX2 JASPAR yes 118262429
chr1 28500105 28500118 EOMES JASPAR yes 27749924
chr1 28500105 28500118 EOMES JASPAR yes 118262430
chr1 28500106 28500114 MGA JASPAR yes 27749925
chr1 28500106 28500114 TBX15 JASPAR yes 27749926
chr1 28500106 28500114 TBX1 JASPAR yes 27749927
chr1 28500106 28500114 TBX4 JASPAR yes 27749928
chr1 28500106 28500114 TBX5 JASPAR yes 27749929
chr1 28500106 28500114 MGA JASPAR yes 118262431
chr1 28500106 28500114 TBX15 JASPAR yes 118262432
chr1 28500106 28500114 TBX1 JASPAR yes 118262433
chr1 28500106 28500114 TBX4 JASPAR yes 118262434
chr1 28500106 28500114 TBX5 JASPAR yes 118262435
chr1 28500106 28500116 TBR1 JASPAR yes 27749930
chr1 28500106 28500116 TBR1 JASPAR yes 118262436
chr1 28500109 28500123 MTF1 JASPAR yes 27749931
chr1 28500109 28500123 MTF1 JASPAR yes 118262437
chr1 28500113 28500123 SREBF1 JASPAR yes 27749932
chr1 28500113 28500123 SREBF2 JASPAR yes 27749933
chr1 28500113 28500123 SREBF1 JASPAR yes 118262438
chr1 28500113 28500123 SREBF2 JASPAR yes 118262439
chr1 28500123 28500133 TEAD1 JASPAR yes 27749934
chr1 28500123 28500133 TEAD4 JASPAR yes 27749935
chr1 28500123 28500133 TEAD1 JASPAR yes 118262440
chr1 28500123 28500133 TEAD4 JASPAR yes 118262441
chr1 28500123 28500135 TEAD1 JASPAR yes 27749936
chr1 28500123 28500135 TEAD1 JASPAR yes 118262442
chr1 28500124 28500132 TEAD3 JASPAR yes 27749937
chr1 28500124 28500132 TEAD3 JASPAR yes 118262443
chr1 28500134 28500154 TP63 JASPAR yes 27749938
chr1 28500134 28500154 TP63 JASPAR yes 118262444
chr1 28500138 28500149 NFE2L2 JASPAR yes 27749939
chr1 28500138 28500149 NFE2L2 JASPAR yes 118262445
chr1 28500154 28500158 NFE TRANSFAC yes 27749940
chr1 28500154 28500158 NFE TRANSFAC yes 118262446
chr1 28500160 28500175 FOXP1 JASPAR yes 27749941
chr1 28500160 28500175 FOXP1 JASPAR yes 118262447
chr1 28500160 28500181 IRF1 JASPAR yes 27749942
chr1 28500160 28500181 IRF1 JASPAR yes 118262448
chr1 28500161 28500176 FOXP1 JASPAR yes 27749943
chr1 28500161 28500176 FOXP1 JASPAR yes 118262449
chr1 28500161 28500182 IRF1 JASPAR yes 27749944
chr1 28500161 28500182 IRF1 JASPAR yes 118262450
chr1 28500162 28500177 FOXP1 JASPAR yes 27749945
chr1 28500162 28500177 FOXP1 JASPAR yes 118262451
chr1 28500162 28500183 IRF1 JASPAR yes 27749946
chr1 28500162 28500183 IRF1 JASPAR yes 118262452
chr1 28500163 28500178 FOXP1 JASPAR yes 27749947
chr1 28500163 28500178 FOXP1 JASPAR yes 118262453
chr1 28500165 28500180 FOXP1 JASPAR yes 27749948
chr1 28500165 28500180 FOXP1 JASPAR yes 118262454
chr1 28500167 28500188 ZNF263 JASPAR yes 27749949
chr1 28500167 28500188 ZNF263 JASPAR yes 118262455
chr1 28500172 28500186 SPI1 JASPAR yes 27749950
chr1 28500172 28500186 SPI1 JASPAR yes 118262456
chr1 28500176 28500186 SP1 JASPAR yes 27749951
chr1 28500176 28500186 SP1 JASPAR yes 118262457
chr1 28500176 28500197 ZNF263 JASPAR yes 27749952
chr1 28500176 28500197 ZNF263 JASPAR yes 118262458
chr1 28500177 28500184 CEBPA TRANSFAC yes 27749953
chr1 28500177 28500184 CEBPA TRANSFAC yes 118262459
chr1 28500179 28500189 MZF1 JASPAR yes 27749954
chr1 28500179 28500189 SP1 JASPAR yes 27749955
chr1 28500179 28500189 ZNF740 JASPAR yes 27749956
chr1 28500179 28500189 MZF1 JASPAR yes 118262460
chr1 28500179 28500189 SP1 JASPAR yes 118262461
chr1 28500179 28500189 ZNF740 JASPAR yes 118262462
chr1 28500180 28500190 ZNF740 JASPAR yes 27749957
chr1 28500180 28500190 ZNF740 JASPAR yes 118262463
chr1 28500184 28500191 SP1 TRANSFAC yes 27749958
chr1 28500184 28500191 SP1 TRANSFAC yes 118262464
chr1 28500184 28500194 SP1 JASPAR yes 27749959
chr1 28500184 28500194 SP1 JASPAR yes 118262465
chr1 28500185 28500193 SP1 TRANSFAC yes 27749960
chr1 28500185 28500193 SP1 TRANSFAC yes 118262466
chr1 28500185 28500194 SP1 TRANSFAC yes 27749961
chr1 28500185 28500194 SP1 TRANSFAC yes 118262467
chr1 28500185 28500195 SP1 JASPAR yes 27749962
chr1 28500185 28500195 SP1 JASPAR yes 118262468
chr1 28500186 28500191 SP1 TRANSFAC yes 27749963
chr1 28500186 28500191 SP1 TRANSFAC yes 118262469
chr1 28500187 28500192 SP1 TRANSFAC yes 27749964
chr1 28500187 28500192 SP1 TRANSFAC yes 118262470
chr1 28500187 28500193 SP1 TRANSFAC yes 27749965
chr1 28500187 28500193 SP1 TRANSFAC yes 118262471
chr1 28500198 28500206 HOXA5 JASPAR yes 27749966
chr1 28500198 28500206 HOXA5 JASPAR yes 118262472
chr1 28500226 28500230 YY1 TRANSFAC yes 27749967
chr1 28500226 28500230 YY1 TRANSFAC yes 118262473
chr1 28500242 28500261 REST JASPAR yes 27749968
chr1 28500242 28500261 REST JASPAR yes 118262474
chr1 28500270 28500278 TBX15 JASPAR yes 27749969
chr1 28500270 28500278 TBX15 JASPAR yes 118262475
chr1 28500288 28500298 SP1 JASPAR yes 27749970
chr1 28500288 28500298 SP1 JASPAR yes 118262476
chr1 28500288 28500308 RREB1 JASPAR yes 27749971
chr1 28500288 28500308 RREB1 JASPAR yes 118262477
chr1 28500291 28500296 SP1 TRANSFAC yes 27749972
chr1 28500291 28500296 SP1 TRANSFAC yes 118262478
chr1 28500292 28500302 ZNF740 JASPAR yes 27749973
chr1 28500292 28500302 ZNF740 JASPAR yes 118262479
chr1 28500293 28500298 TFAP2A TRANSFAC yes 27749974
chr1 28500293 28500298 TFAP2A TRANSFAC yes 118262480
chr1 28500293 28500299 MZF1 JASPAR yes 27749975
chr1 28500293 28500299 MZF1 JASPAR yes 118262481
chr1 28500293 28500303 SP1 JASPAR yes 27749976
chr1 28500293 28500303 SP1 JASPAR yes 118262482
chr1 28500293 28500314 ZNF263 JASPAR yes 27749977
chr1 28500293 28500314 ZNF263 JASPAR yes 118262483
chr1 28500295 28500301 MAZ TRANSFAC yes 27749978
chr1 28500295 28500301 MAZ TRANSFAC yes 118262484
chr1 28500302 28500316 PLAG1 JASPAR yes 27749979
chr1 28500302 28500316 PLAG1 JASPAR yes 118262485
chr1 28500334 28500338 NFE TRANSFAC yes 27749980
chr1 28500334 28500338 NFE TRANSFAC yes 118262486
chr1 28500334 28500347 SMAD2 JASPAR yes 27749981
chr1 28500334 28500347 SMAD2 JASPAR yes 118262487
chr1 28500348 28500368 RREB1 JASPAR yes 27749982
chr1 28500348 28500368 RREB1 JASPAR yes 118262488
chr1 28500349 28500361 FOXI1 JASPAR yes 27749983
chr1 28500349 28500361 FOXI1 JASPAR yes 118262489
chr1 28500352 28500372 RREB1 JASPAR yes 27749984
chr1 28500352 28500372 RREB1 JASPAR yes 118262490
chr1 28500353 28500359 HiNF-A TRANSFAC yes 27749985
chr1 28500353 28500359 HiNF-A TRANSFAC yes 118262491
chr1 28500353 28500373 RREB1 JASPAR yes 27749986
chr1 28500353 28500373 RREB1 JASPAR yes 118262492
chr1 28500357 28500369 FOXI1 JASPAR yes 27749987
chr1 28500357 28500369 FOXI1 JASPAR yes 118262493
chr1 28500361 28500373 FOXI1 JASPAR yes 27749988
chr1 28500361 28500373 FOXI1 JASPAR yes 118262494
chr1 28500363 28500374 FOXH1 JASPAR yes 27749989
chr1 28500363 28500374 FOXH1 JASPAR yes 118262495
chr1 28500386 28500399 NFKB1 JASPAR yes 27749990
chr1 28500386 28500399 NFKB1 JASPAR yes 118262496
chr1 28500393 28500405 TFAP2A JASPAR yes 27749991
chr1 28500393 28500405 TFAP2B JASPAR yes 27749992
chr1 28500393 28500405 TFAP2C JASPAR yes 27749993
chr1 28500393 28500405 TFAP2A JASPAR yes 118262497
chr1 28500393 28500405 TFAP2B JASPAR yes 118262498
chr1 28500393 28500405 TFAP2C JASPAR yes 118262499
SNP sites on vista994[chr1:28500052-28500411]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28500155 rs748279 C T
NFE
190638
chr1 28500184 rs572898454 G A,C
CEBPA MZF1 SP1 SPI1 ZNF263 ZNF740
190639
chr1 28500218 rs116631913 T A no 190640
chr1 28500242 rs145754563 C T
REST
190641
chr1 28500267 rs142484887 G C no 190642
chr1 28500400 rs557842432 C T
TFAP2A TFAP2B TFAP2C
190643
Genes possibly regulated by vista994[chr1:28500052-28500411]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28296855 28415207 - EYA3 ENSG00000158161.11 28415207 0.83 0.99 404 15155
chr1 28473677 28520447 - PTAFR ENSG00000169403.7 28520447 0.84 1.0 405 79964
chr1 28525967 28559536 - DNAJC8 ENSG00000126698.6 28559536 0.64 0.99 406 40875
chr1 28527013 28527152 - AL353354.1 ENSG00000215902.1 28527152 0.0 0.0 407 73259
chr1 28527070 28527419 + AL353354.2 ENSG00000269804.1 28527070 0.98 1.0 408 73341
chr1 28562620 28573417 + ATPIF1 ENSG00000130770.13 28562620 0.9 0.99 409 37791
chr1 28586038 28609002 + SESN2 ENSG00000130766.4 28586038 0.78 1.0 410 14373
Expression level of Genes
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miRNAs possibly regulated by vista994[chr1:28500052-28500411]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results