EnhancerDB
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  3. rs10789401[chr1:42081111]
Enhancers that have rs10789401[chr1:42081111]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42077298 42108035 enh11792
Prostate (PC-3) Brain (SK-N-SH) Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Placenta Breast Thyroid Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Spleen Thymus Heart
Transcript factors that have rs10789401[chr1:42081111]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42080909 42082061 ZNF143 GTRD no Epithelial (MCF-7) 107802961
chr1 42081107 42081116 NKX3-2 JASPAR yes 28401480
chr1 42081107 42081117 NKX2-3 JASPAR yes 28401481
chr1 42081108 42081116 ISL2 JASPAR yes 28401482
chr1 42081108 42081117 NKX2-8 JASPAR yes 28401483
chr1 42081111 42081120 NKX2-8 JASPAR yes 28401484
chr1 42081111 42081121 NKX2-3 JASPAR yes 28401485
Genes associated with rs10789401[chr1:42081111], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More