EnhancerDB
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  3. rs115340490[chr1:200307454]
Enhancers that have rs115340490[chr1:200307454]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200297972 200315295 enh868
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs115340490[chr1:200307454]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200307098 200308110 ZNF143 GTRD no Epithelial (MCF-7) 21363111
chr1 200307149 200307928 ZNF143 GTRD no Epithelial (MCF-7) 21363112
chr1 200307191 200308023 ZNF143 GTRD no Epithelial (MCF-7) 21363113
chr1 200307198 200308198 ZNF143 GTRD no Epithelial (MCF-7) 21363114
chr1 200307225 200308248 ZNF274 GTRD no Cervix (HeLa-S3) 21363115
chr1 200307243 200307912 ZNF274 GTRD no Liver (HepG2) 21363116
chr1 200307249 200308074 ZNF274 GTRD no Liver (HepG2) 21363117
chr1 200307271 200307974 ZNF274 GTRD no Liver (HepG2) 21363118
chr1 200307305 200307948 ZNF274 GTRD no Liver (HepG2) 21363119
chr1 200307305 200307993 ZNF274 GTRD no Liver (HepG2) 21363120
chr1 200307306 200307927 ZNF274 GTRD no Cervix (HeLa-S3) 21363121
chr1 200307309 200308017 ZNF143 GTRD no Epithelial (MCF-7) 21363122
chr1 200307319 200308012 ZNF143 GTRD no Epithelial (MCF-7) 21363123
chr1 200307320 200307992 ZNF274 GTRD no Cervix (HeLa-S3) 21363124
chr1 200307338 200307846 ZNF274 GTRD no Liver (HepG2) 21363125
chr1 200307341 200307915 ZNF274 GTRD no Liver (HepG2) 21363126
chr1 200307350 200307977 ZNF143 GTRD no Epithelial (MCF-7) 21363127
chr1 200307362 200308005 ZNF143 GTRD no Epithelial (MCF-7) 21363128
chr1 200307369 200307939 ZNF143 GTRD no Epithelial (MCF-7) 21363129
chr1 200307385 200307856 ZNF274 GTRD no Liver (HepG2) 21363130
chr1 200307389 200307774 ZNF143 GTRD no Epithelial (MCF-7) 21363131
chr1 200307393 200307937 ZNF274 GTRD no Liver (HepG2) 21363132
chr1 200307400 200307680 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21363133
chr1 200307411 200307864 ZNF143 GTRD no Epithelial (MCF-7) 21363134
chr1 200307417 200307838 ZNF143 GTRD no Epithelial (MCF-7) 21363135
chr1 200307435 200307881 ZNF274 GTRD no Liver (HepG2) 21363136
chr1 200307447 200307770 ZNF143 GTRD no Epithelial (MCF-7) 21363137
chr1 200307449 200307454 SP1 TRANSFAC yes 34436509
chr1 200307454 200307464 TEAD1 JASPAR yes 34436510
chr1 200307454 200307466 TEAD1 JASPAR yes 34436511
Genes associated with rs115340490[chr1:200307454], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More