EnhancerDB
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Enhancers that have rs11589220[chr1:39484754]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39479173 39484775 enh66903
Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs11589220[chr1:39484754]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39484740 39484756 POU4F2 JASPAR yes 28248171
chr1 39484740 39484756 POU4F3 JASPAR yes 28248172
chr1 39484741 39484756 FOXA1 JASPAR yes 28248174
chr1 39484742 39484754 FOXI1 JASPAR yes 28248175
chr1 39484742 39484756 POU4F1 JASPAR yes 28248176
chr1 39484742 39484757 FOXP1 JASPAR yes 28248177
chr1 39484742 39484757 HNF1A JASPAR yes 28248178
chr1 39484743 39484755 FOXC2 JASPAR yes 28248179
chr1 39484743 39484757 ONECUT2 JASPAR yes 28248180
chr1 39484743 39484757 ONECUT3 JASPAR yes 28248181
chr1 39484744 39484755 FOXB1 JASPAR yes 28248182
chr1 39484744 39484755 FOXC1 JASPAR yes 28248183
chr1 39484744 39484755 PROP1 JASPAR yes 28248184
chr1 39484745 39484760 FOXA1 JASPAR yes 28248186
chr1 39484746 39484758 FOXI1 JASPAR yes 28248187
chr1 39484746 39484761 FOXP1 JASPAR yes 28248188
chr1 39484747 39484759 FOXC2 JASPAR yes 28248189
chr1 39484747 39484761 ONECUT2 JASPAR yes 28248190
chr1 39484747 39484761 ONECUT3 JASPAR yes 28248191
chr1 39484748 39484759 FOXB1 JASPAR yes 28248192
chr1 39484748 39484759 FOXC1 JASPAR yes 28248193
chr1 39484751 39484763 MEF2D JASPAR yes 28248195
chr1 39484753 39484757 YY1 TRANSFAC yes 28248196
Genes associated with rs11589220[chr1:39484754], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More