EnhancerDB
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  3. rs116439052[chr6:43781834]
Enhancers that have rs116439052[chr6:43781834]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 43752825 43813215 enh23254
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs116439052[chr6:43781834]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 43781820 43781834 IRF7 JASPAR yes 101788159
chr6 43781827 43781837 HOXA13 JASPAR yes 101788161
chr6 43781827 43781837 HOXB13 JASPAR yes 101788162
chr6 43781827 43781837 HOXD13 JASPAR yes 101788163
chr6 43781828 43781838 ALX3 JASPAR yes 101788164
chr6 43781828 43781838 ESX1 JASPAR yes 101788165
chr6 43781828 43781838 GSX1 JASPAR yes 101788166
chr6 43781828 43781838 GSX2 JASPAR yes 101788167
chr6 43781828 43781838 LBX2 JASPAR yes 101788168
chr6 43781828 43781838 MIXL1 JASPAR yes 101788169
chr6 43781828 43781838 MNX1 JASPAR yes 101788170
chr6 43781828 43781838 RAX JASPAR yes 101788171
chr6 43781829 43781837 BARX1 JASPAR yes 101788172
chr6 43781829 43781837 BSX JASPAR yes 101788173
chr6 43781829 43781837 DLX6 JASPAR yes 101788174
chr6 43781829 43781837 ISX JASPAR yes 101788175
chr6 43781829 43781837 LBX1 JASPAR yes 101788176
chr6 43781829 43781837 LHX9 JASPAR yes 101788177
chr6 43781829 43781837 MSX1 JASPAR yes 101788178
chr6 43781829 43781837 MSX2 JASPAR yes 101788179
chr6 43781829 43781837 NKX6-2 JASPAR yes 101788180
chr6 43781829 43781837 PRRX1 JASPAR yes 101788181
chr6 43781829 43781837 RAX2 JASPAR yes 101788182
chr6 43781829 43781837 SHOX JASPAR yes 101788183
chr6 43781829 43781837 UNCX JASPAR yes 101788184
chr6 43781830 43781846 E2F2 JASPAR yes 101788185
Genes associated with rs116439052[chr6:43781834], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More