EnhancerDB
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  3. rs11827639[chr11:66853170]
Enhancers that have rs11827639[chr11:66853170]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr11 66841490 66853575 enh14015
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Esophagus Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Epithelial (MCF-7)
Transcript factors that have rs11827639[chr11:66853170]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr11 66848276 66863173 ZNF143 GTRD no Epithelial (MCF-7) 21497058
chr11 66848276 66863173 ZNF143 GTRD no Epithelial (MCF-7) 107983606
chr11 66849803 66853450 TCF7L2 GTRD no Colon (HCT116) 21497124
chr11 66851038 66853233 ZNF274 GTRD no Blood (GM12878) 21497133
chr11 66851656 66858491 ZNF143 GTRD no Epithelial (MCF-7) 21497149
chr11 66851657 66855027 ZNF143 GTRD no Epithelial (MCF-7) 21497150
chr11 66852092 66855249 TCF7L2 GTRD no Colon (HCT116) 21497167
chr11 66852166 66858516 ZNF143 GTRD no Epithelial (MCF-7) 21497172
chr11 66852176 66853327 TCF7L2 GTRD no Colon (HCT116) 21497173
chr11 66852226 66853604 TCF7L2 GTRD no Colon (HCT116) 21497174
chr11 66852433 66853240 TCF7L2 GTRD no Colon (HCT116) 21497176
chr11 66852580 66857286 ZNF143 GTRD no Epithelial (MCF-7) 21497177
chr11 66853140 66855240 TCF7L2 GTRD no Colon (HCT116) 21497178
chr11 66853167 66853182 MEF2A JASPAR yes 39400656
chr11 66853168 66853183 MEF2C JASPAR yes 39400657
chr11 66853169 66853181 MEF2A JASPAR yes 39400658
chr11 66853169 66853181 MEF2B JASPAR yes 39400659
chr11 66853169 66853181 MEF2D JASPAR yes 39400660
chr11 66853170 66853180 MEF2A JASPAR yes 39400661
Genes associated with rs11827639[chr11:66853170], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr11 67070919 67080078 + SSH3 ENSG00000172830.8 67070919 217749 Lung 0.0349953 11142