EnhancerDB
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  3. rs12062462[chr1:42151757]
Enhancers that have rs12062462[chr1:42151757]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12062462[chr1:42151757]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42151476 42153185 TCF7L2 GTRD no Colon (HCT116) 107802968
chr1 42151736 42151757 IRF1 JASPAR yes 28410141
chr1 42151740 42151760 RREB1 JASPAR yes 28410145
chr1 42151741 42151762 IRF1 JASPAR yes 28410146
chr1 42151742 42151757 FOXP1 JASPAR yes 28410148
chr1 42151743 42151758 STAT2 JASPAR yes 28410149
chr1 42151745 42151757 IRF1 JASPAR yes 28410150
chr1 42151747 42151762 FOXP1 JASPAR yes 28410152
chr1 42151748 42151759 FOXP2 JASPAR yes 28410153
chr1 42151748 42151760 FOXC2 JASPAR yes 28410154
Genes associated with rs12062462[chr1:42151757], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More