EnhancerDB
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  3. rs12062999[chr1:3580271]
Enhancers that have rs12062999[chr1:3580271]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3576945 3597855 enh11
Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7)
Transcript factors that have rs12062999[chr1:3580271]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3579956 3581320 TCF7L2 GTRD no Colon (HCT116) 21325205
chr1 3579956 3581320 TCF7L2 GTRD no Colon (HCT116) 107801868
chr1 3580256 3580271 FOXP1 JASPAR yes 26299734
chr1 3580257 3580272 FOXP1 JASPAR yes 26299735
chr1 3580258 3580273 FOXP1 JASPAR yes 26299736
chr1 3580258 3580279 IRF1 JASPAR yes 26299737
chr1 3580259 3580274 FOXP1 JASPAR yes 26299738
chr1 3580259 3580280 IRF1 JASPAR yes 26299739
chr1 3580260 3580275 FOXP1 JASPAR yes 26299740
chr1 3580262 3580277 FOXP1 JASPAR yes 26299741
chr1 3580263 3580284 IRF1 JASPAR yes 26299742
chr1 3580264 3580279 FOXP1 JASPAR yes 26299743
chr1 3580267 3580281 SPIC JASPAR yes 26299744
chr1 3580267 3580281 STAT1 JASPAR yes 26299745
chr1 3580267 3580282 PRDM1 JASPAR yes 26299746
chr1 3580267 3580282 STAT2 JASPAR yes 26299747
chr1 3580267 3580288 IRF1 JASPAR yes 26299748
chr1 3580271 3580292 IRF1 JASPAR yes 26299749
Genes associated with rs12062999[chr1:3580271], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More