EnhancerDB
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  3. rs12074559[chr1:200416288]
Enhancers that have rs12074559[chr1:200416288]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200395745 200424875 enh27417
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Astrocyte Peripheral Blood (MM.1S) Lung (PC-9) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs12074559[chr1:200416288]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200415185 200418329 AR GTRD no Prostate (PC-3) 21363566
chr1 200415348 200416829 ZNF274 GTRD no Cervix (HeLa-S3) 21363567
chr1 200415360 200417522 ZNF274 GTRD no Cervix (HeLa-S3) 21363568
chr1 200415406 200416821 ZNF274 GTRD no Cervix (HeLa-S3) 21363569
chr1 200415409 200417455 ZNF274 GTRD no Cervix (HeLa-S3) 21363570
chr1 200415424 200417404 ZNF274 GTRD no Cervix (HeLa-S3) 21363571
chr1 200415469 200417285 ZNF274 GTRD no Cervix (HeLa-S3) 21363572
chr1 200415544 200416821 ZNF274 GTRD no Cervix (HeLa-S3) 21363573
chr1 200415565 200416548 ZNF274 GTRD no Cervix (HeLa-S3) 21363574
chr1 200415565 200416558 ZNF274 GTRD no Cervix (HeLa-S3) 21363575
chr1 200415745 200416522 ZNF143 GTRD no Epithelial (MCF-7) 21363576
chr1 200415753 200416478 ZNF274 GTRD no Cervix (HeLa-S3) 21363577
chr1 200415923 200416339 ZNF274 GTRD no Cervix (HeLa-S3) 21363578
chr1 200415963 200416406 ZNF274 GTRD no Cervix (HeLa-S3) 21363579
chr1 200415980 200416656 ZNF143 GTRD no Epithelial (MCF-7) 21363580
chr1 200415984 200416629 ZNF143 GTRD no Epithelial (MCF-7) 21363581
chr1 200415985 200416339 ZNF143 GTRD no Epithelial (MCF-7) 21363582
chr1 200415998 200416598 ZNF143 GTRD no Epithelial (MCF-7) 21363583
chr1 200416281 200416296 TFAP2C JASPAR yes 34448746
chr1 200416282 200416293 EBF1 JASPAR yes 34448747
Genes associated with rs12074559[chr1:200416288], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More