EnhancerDB
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  3. rs12090008[chr1:117020344]
Enhancers that have rs12090008[chr1:117020344]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12090008[chr1:117020344]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117020185 117020449 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21332909
chr1 117020262 117020350 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21332910
chr1 117020338 117020352 GATA2 JASPAR yes 31811188
chr1 117020342 117020350 GATA5 JASPAR yes 31811189
Genes associated with rs12090008[chr1:117020344], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More