EnhancerDB
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  3. rs12090322[chr1:200365892]
Enhancers that have rs12090322[chr1:200365892]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200355797 200367837 enh870
Placenta Neural Stem Cells (H9) Blood (Karpas-422)
Transcript factors that have rs12090322[chr1:200365892]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200365717 200366310 SOX2 GTRD no Neural Stem Cells (H9) 21363454
chr1 200365805 200366084 SOX2 GTRD no Neural Stem Cells (H9) 21363455
chr1 200365809 200366225 SOX2 GTRD no Neural Stem Cells (H9) 21363456
chr1 200365816 200366284 SOX2 GTRD no Neural Stem Cells (H9) 21363457
chr1 200365821 200366231 SOX2 GTRD no Neural Stem Cells (H9) 21363458
chr1 200365876 200366039 SOX2 GTRD no Neural Stem Cells (H9) 21363459
chr1 200365879 200365892 POU3F3 JASPAR yes 34444408
chr1 200365879 200365893 POU1F1 JASPAR yes 34444409
chr1 200365880 200365892 POU3F1 JASPAR yes 34444410
chr1 200365880 200365892 POU3F2 JASPAR yes 34444411
chr1 200365880 200365893 POU2F2 JASPAR yes 34444412
Genes associated with rs12090322[chr1:200365892], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More