EnhancerDB
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  3. rs12297878[chr12:120725939]
Enhancers that have rs12297878[chr12:120725939]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 120716965 120734448 enh2637
Prostate (PC-3) Prostate (RWPE1) Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Uterus Epithelial (MCF-7)
Transcript factors that have rs12297878[chr12:120725939]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 120724917 120727228 ZNF143 GTRD no Epithelial (MCF-7) 21578609
chr12 120725003 120726363 ZNF143 GTRD no Epithelial (MCF-7) 21578610
chr12 120725212 120726308 TCF7L2 GTRD no Colon (HCT116) 21578611
chr12 120725282 120726464 ZNF143 GTRD no Epithelial (MCF-7) 21578612
chr12 120725309 120726363 TCF7L2 GTRD no Colon (HCT116) 21578613
chr12 120725372 120726183 ZNF143 GTRD no Epithelial (MCF-7) 21578615
chr12 120725406 120726219 ZNF143 GTRD no Epithelial (MCF-7) 21578616
chr12 120725415 120726421 TCF7L2 GTRD no Colon (HCT116) 21578617
chr12 120725435 120726292 ZNF143 GTRD no Epithelial (MCF-7) 21578619
chr12 120725468 120726480 ZNF143 GTRD no Epithelial (MCF-7) 21578620
chr12 120725473 120726239 TCF7L2 GTRD no Colon (HCT116) 21578621
chr12 120725480 120726361 TCF7L2 GTRD no Colon (HCT116) 21578622
chr12 120725493 120726433 TCF7L2 GTRD no Colon (HCT116) 21578623
chr12 120725555 120726450 TCF7L2 GTRD no Colon (HCT116) 21578624
chr12 120725558 120726170 TCF7L2 GTRD no Colon (HCT116) 21578625
chr12 120725565 120726350 TCF7L2 GTRD no Colon (HCT116) 21578626
chr12 120725591 120726335 ZNF143 GTRD no Epithelial (MCF-7) 21578627
chr12 120725596 120726099 TCF7L2 GTRD no Colon (HCT116) 21578628
chr12 120725600 120726342 ZNF143 GTRD no Epithelial (MCF-7) 21578629
chr12 120725601 120726330 ZNF143 GTRD no Epithelial (MCF-7) 21578630
chr12 120725602 120726248 TCF7L2 GTRD no Colon (HCT116) 21578631
chr12 120725603 120726067 TCF7L2 GTRD no Colon (HCT116) 21578632
chr12 120725611 120726130 TCF7L2 GTRD no Colon (HCT116) 21578633
chr12 120725613 120726413 TCF7L2 GTRD no Colon (HCT116) 21578634
chr12 120725650 120726322 ZNF143 GTRD no Epithelial (MCF-7) 21578635
chr12 120725795 120726050 TCF7L2 GTRD no Colon (HCT116) 21578636
chr12 120725924 120725941 ZNF410 JASPAR yes 124163390
Genes associated with rs12297878[chr12:120725939], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 119772517 119978852 + CCDC60 ENSG00000183273.2 119772517 747087 Uterus 0.38842 12591