EnhancerDB
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  3. rs12404436[chr1:42418570]
Enhancers that have rs12404436[chr1:42418570]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42414541 42425761 enh26655
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Astrocyte Bone (Osteoblast) Blood (GM12878) Colon (HCT116) Breast Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs12404436[chr1:42418570]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42418556 42418571 STAT1 JASPAR yes 28441322
chr1 42418566 42418576 TBX21 JASPAR yes 28441325
chr1 42418566 42418577 TBX20 JASPAR yes 28441326
chr1 42418566 42418577 TBX2 JASPAR yes 28441327
chr1 42418566 42418579 EOMES JASPAR yes 28441328
chr1 42418567 42418575 TBX15 JASPAR yes 28441329
chr1 42418567 42418575 TBX1 JASPAR yes 28441330
chr1 42418567 42418575 TBX4 JASPAR yes 28441331
chr1 42418567 42418575 TBX5 JASPAR yes 28441332
chr1 42418567 42418577 TBR1 JASPAR yes 28441333
Genes associated with rs12404436[chr1:42418570], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More