EnhancerDB
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  3. rs12406799[chr1:117015884]
Enhancers that have rs12406799[chr1:117015884]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12406799[chr1:117015884]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117015421 117016377 ZNF143 GTRD no Epithelial (MCF-7) 21332809
chr1 117015437 117016480 ZNF143 GTRD no Epithelial (MCF-7) 21332810
chr1 117015531 117016164 ZNF143 GTRD no Epithelial (MCF-7) 21332811
chr1 117015537 117016205 ZNF143 GTRD no Epithelial (MCF-7) 21332812
chr1 117015563 117016215 ZNF143 GTRD no Epithelial (MCF-7) 21332813
chr1 117015626 117016122 ZNF143 GTRD no Epithelial (MCF-7) 21332814
chr1 117015632 117016393 ZNF143 GTRD no Epithelial (MCF-7) 21332815
chr1 117015661 117016370 ZNF143 GTRD no Epithelial (MCF-7) 21332816
chr1 117015676 117016095 ZNF143 GTRD no Epithelial (MCF-7) 21332817
chr1 117015679 117016208 ZNF143 GTRD no Epithelial (MCF-7) 21332818
chr1 117015689 117016171 ZNF143 GTRD no Epithelial (MCF-7) 21332819
chr1 117015884 117015893 SOX9 JASPAR yes 31810570
Genes associated with rs12406799[chr1:117015884], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More