EnhancerDB
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  3. rs12408540[chr1:220720031]
Enhancers that have rs12408540[chr1:220720031]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 220716510 220720675 enh67285
Neural Stem Cells (H9) Lung (PC-9)
Transcript factors that have rs12408540[chr1:220720031]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 220720023 220720039 NFYA JASPAR yes 35500678
chr1 220720025 220720035 EN2 JASPAR yes 35500679
chr1 220720025 220720035 ESX1 JASPAR yes 35500680
chr1 220720025 220720035 GBX1 JASPAR yes 35500681
chr1 220720025 220720035 GBX2 JASPAR yes 35500682
chr1 220720025 220720035 HESX1 JASPAR yes 35500683
chr1 220720025 220720035 LBX2 JASPAR yes 35500684
chr1 220720025 220720035 LHX2 JASPAR yes 35500685
chr1 220720025 220720035 RAX JASPAR yes 35500686
chr1 220720026 220720034 BARX1 JASPAR yes 35500687
chr1 220720026 220720034 BSX JASPAR yes 35500688
chr1 220720026 220720034 EN1 JASPAR yes 35500689
chr1 220720026 220720034 ISX JASPAR yes 35500690
chr1 220720026 220720034 LHX9 JASPAR yes 35500691
chr1 220720026 220720034 MSX1 JASPAR yes 35500692
chr1 220720026 220720034 MSX2 JASPAR yes 35500693
chr1 220720026 220720034 PRRX1 JASPAR yes 35500694
chr1 220720026 220720034 RAX2 JASPAR yes 35500695
chr1 220720026 220720034 SHOX JASPAR yes 35500696
chr1 220720026 220720041 NFYB JASPAR yes 35500697
Genes associated with rs12408540[chr1:220720031], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More