EnhancerDB
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  3. rs12409946[chr1:42179397]
Enhancers that have rs12409946[chr1:42179397]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42174680 42197130 enh289
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Muscle (Myotube) Thymus Heart
Transcript factors that have rs12409946[chr1:42179397]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42179390 42179404 ZIC1 JASPAR yes 28412648
chr1 42179390 42179405 ZIC3 JASPAR yes 28412649
chr1 42179390 42179405 ZIC4 JASPAR yes 28412650
Genes associated with rs12409946[chr1:42179397], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More