EnhancerDB
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  3. rs12562016[chr1:7539350]
Enhancers that have rs12562016[chr1:7539350]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 7527289 7545958 enh11454
Astrocyte Adrenal Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Spleen Lung Muscle (A673) Heart
Transcript factors that have rs12562016[chr1:7539350]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 7537640 7539989 TCF7L2 GTRD no Colon (HCT116) 107801928
chr1 7538625 7540721 ZNF274 GTRD no Bone Marrow (K562) 107801929
chr1 7539330 7539350 TP63 JASPAR yes 26467803
chr1 7539341 7539350 SNAI2 JASPAR yes 26467805
chr1 7539341 7539351 ID4 JASPAR yes 26467806
chr1 7539341 7539351 TCF3 JASPAR yes 26467807
chr1 7539341 7539351 TCF4 JASPAR yes 26467808
chr1 7539343 7539352 ZEB1 JASPAR yes 26467809
Genes associated with rs12562016[chr1:7539350], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More