EnhancerDB
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  3. rs12563738[chr1:42145861]
Enhancers that have rs12563738[chr1:42145861]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12563738[chr1:42145861]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42145852 42145870 ESR2 JASPAR yes 28409319
chr1 42145854 42145869 ESR2 JASPAR yes 28409320
chr1 42145855 42145871 RFX3 JASPAR yes 28409322
chr1 42145855 42145871 RFX5 JASPAR yes 28409323
chr1 42145856 42145875 RFX2 JASPAR yes 28409324
chr1 42145861 42145870 NFIX JASPAR yes 28409325
Genes associated with rs12563738[chr1:42145861], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More