EnhancerDB
  1. Home
  2. SNP
  3. rs12563800[chr1:42146476]
Enhancers that have rs12563800[chr1:42146476]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42121525 42155124 enh11793
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12563800[chr1:42146476]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42146476 42146485 NKX2-8 JASPAR yes 28409389
chr1 42146476 42146486 NKX2-3 JASPAR yes 28409390
Genes associated with rs12563800[chr1:42146476], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More