EnhancerDB
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Enhancers that have rs12609978[chr19:10347248]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 10331225 10355975 enh5000
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Bone (Osteoblast) Lung Blood (OCI-LY7) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas Uterus Blood (T-cell) Heart
Transcript factors that have rs12609978[chr19:10347248]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 10346247 10348576 ZNF274 GTRD no Blood (GM12878) 21848479
chr19 10346247 10348576 ZNF274 GTRD no Blood (GM12878) 108382959
chr19 10346259 10347469 ZNF274 GTRD no Bone Marrow (K562) 108382960
chr19 10346328 10347473 ZNF274 GTRD no Blood (GM12878) 21848480
chr19 10346328 10347473 ZNF274 GTRD no Blood (GM12878) 108382964
chr19 10346332 10347464 ZNF274 GTRD no Bone Marrow (K562) 108382968
chr19 10346438 10347268 ZNF274 GTRD no Liver (HepG2) 21848495
chr19 10346438 10347268 ZNF274 GTRD no Liver (HepG2) 108382989
chr19 10346450 10347441 ZNF274 GTRD no Bone Marrow (K562) 108382992
chr19 10346457 10347418 ZNF274 GTRD no Bone Marrow (K562) 108382993
chr19 10346523 10347433 ZNF274 GTRD no Bone Marrow (K562) 108383007
chr19 10346580 10347338 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21848504
chr19 10346580 10347338 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108383010
chr19 10346580 10347428 POLR2A UCSC Txn Factor no Conserved 108383011
chr19 10346666 10347524 ZNF274 GTRD no Blood (GM12878) 21848513
chr19 10346666 10347524 ZNF274 GTRD no Blood (GM12878) 108383024
chr19 10346776 10347352 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108383047
chr19 10346795 10347319 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108383055
chr19 10346827 10347260 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21848537
chr19 10346827 10347260 ELF1 UCSC Txn Factor no Conserved 108383067
chr19 10346827 10347260 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108383068
chr19 10346838 10347402 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21848541
chr19 10346838 10347402 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108383072
chr19 10346859 10347249 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108383079
chr19 10346881 10347261 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21848548
chr19 10346881 10347261 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108383082
chr19 10346889 10347389 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21848550
chr19 10346889 10347389 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108383084
chr19 10346914 10347442 ZNF274 GTRD no Bone Marrow (K562) 108383089
chr19 10346939 10347279 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21848555
chr19 10346939 10347279 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108383091
chr19 10347001 10347318 ZNF274 GTRD no Liver (HepG2) 21848556
chr19 10347001 10347318 ZNF274 GTRD no Liver (HepG2) 108383094
chr19 10347143 10347442 ZNF143 GTRD no Epithelial (MCF-7) 21848558
chr19 10347230 10347250 RREB1 JASPAR yes 112415520
chr19 10347237 10347252 NR2C2 JASPAR yes 112415525
chr19 10347238 10347248 SP1 JASPAR yes 112415527
Genes associated with rs12609978[chr19:10347248], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More