EnhancerDB
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  3. rs12754642[chr1:39570873]
Enhancers that have rs12754642[chr1:39570873]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39562325 39585995 enh11758
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Ovary Esophagus Astrocyte Liver Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Uterus
Transcript factors that have rs12754642[chr1:39570873]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39570860 39570873 TFAP2A JASPAR yes 28251811
chr1 39570860 39570873 TFAP2B JASPAR yes 28251812
chr1 39570860 39570873 TFAP2C JASPAR yes 28251813
chr1 39570860 39570874 EBF1 JASPAR yes 28251814
chr1 39570862 39570873 EBF1 JASPAR yes 28251815
chr1 39570862 39570876 PLAG1 JASPAR yes 28251816
Genes associated with rs12754642[chr1:39570873], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More