EnhancerDB
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  3. rs12928539[chr16:19388990]
Enhancers that have rs12928539[chr16:19388990]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 19385025 19410955 enh16592
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Stomach Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs12928539[chr16:19388990]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 19388692 19389854 ZNF274 GTRD no Bone Marrow (K562) 21695316
chr16 19388753 19389887 ZNF143 GTRD no Epithelial (MCF-7) 21695317
chr16 19388780 19389822 ZNF143 GTRD no Epithelial (MCF-7) 21695318
chr16 19388788 19389768 ZNF143 GTRD no Epithelial (MCF-7) 21695319
chr16 19388807 19390052 ZNF274 GTRD no Cervix (HeLa-S3) 21695320
chr16 19388808 19389572 ZNF274 GTRD no Bone Marrow (K562) 21695321
chr16 19388848 19389923 ZNF274 GTRD no Cervix (HeLa-S3) 21695322
chr16 19388873 19389686 ZNF274 GTRD no Bone Marrow (K562) 21695323
chr16 19388876 19389199 ZNF143 GTRD no Epithelial (MCF-7) 21695324
chr16 19388907 19389926 ZNF274 GTRD no Cervix (HeLa-S3) 21695325
chr16 19388921 19389857 ZNF143 GTRD no Epithelial (MCF-7) 21695326
chr16 19388935 19389688 ZNF274 GTRD no Bone Marrow (K562) 21695327
chr16 19388935 19389814 ZNF274 GTRD no Bone Marrow (K562) 21695328
chr16 19388947 19389758 ZNF143 GTRD no Epithelial (MCF-7) 21695329
chr16 19388960 19389969 ZNF143 GTRD no Epithelial (MCF-7) 21695330
chr16 19388969 19389684 ZNF143 GTRD no Epithelial (MCF-7) 21695331
chr16 19388976 19389683 ZNF274 GTRD no Bone Marrow (K562) 21695332
chr16 19388987 19389002 HSF1 JASPAR yes 9863774
chr16 19388988 19389001 HSF1 JASPAR yes 9863775
chr16 19388988 19389001 HSF2 JASPAR yes 9863776
chr16 19388988 19389001 HSF4 JASPAR yes 9863777
chr16 19388988 19389673 ZNF143 GTRD no Epithelial (MCF-7) 21695333
Genes associated with rs12928539[chr16:19388990], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More