EnhancerDB
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  3. rs12940340[chr17:38267610]
Enhancers that have rs12940340[chr17:38267610]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 38259185 38273195 enh4407
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12940340[chr17:38267610]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 38266954 38267786 ZNF143 GTRD no Epithelial (MCF-7) 21753265
chr17 38267020 38267662 ZNF143 GTRD no Epithelial (MCF-7) 21753266
chr17 38267045 38267648 ZNF143 GTRD no Epithelial (MCF-7) 21753267
chr17 38267316 38267760 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21753268
chr17 38267453 38267763 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21753269
chr17 38267503 38268227 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21753270
chr17 38267506 38267726 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21753271
chr17 38267515 38268111 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21753272
chr17 38267567 38268217 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21753273
chr17 38267598 38267611 ZBED1 JASPAR yes 54193969
chr17 38267608 38267614 SOX10 JASPAR yes 54193970
chr17 38267608 38268018 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21753274
Genes associated with rs12940340[chr17:38267610], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More