EnhancerDB
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Enhancers that have rs12946307[chr17:6575327]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 6552025 6577412 enh4228
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Blood (OCI-LY7) Colon (HCT116) Blood (Karpas-422) Lung (PC-9)
Transcript factors that have rs12946307[chr17:6575327]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 6574852 6575592 TCF7L2 GTRD no Colon (HCT116) 21740907
chr17 6575052 6575397 ZNF274 GTRD no Cervix (HeLa-S3) 21740908
chr17 6575096 6575787 ERG GTRD no Prostate (RWPE1) 21740909
chr17 6575146 6575422 ZNF274 GTRD no Liver (HepG2) 21740910
chr17 6575312 6575327 ZIC3 JASPAR yes 52924537
chr17 6575312 6575327 ZIC4 JASPAR yes 52924538
chr17 6575313 6575327 GLIS2 JASPAR yes 52924539
chr17 6575313 6575327 GLIS3 JASPAR yes 52924540
chr17 6575313 6575327 ZIC1 JASPAR yes 52924541
chr17 6575317 6575329 GLI2 JASPAR yes 52924542
chr17 6575317 6575329 ZBTB7B JASPAR yes 52924543
chr17 6575317 6575329 ZBTB7C JASPAR yes 52924544
chr17 6575318 6575330 ZBTB7A JASPAR yes 52924545
chr17 6575323 6575327 H4TF2 TRANSFAC yes 52924546
Genes associated with rs12946307[chr17:6575327], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More