EnhancerDB
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  3. rs12952096[chr17:41448049]
Enhancers that have rs12952096[chr17:41448049]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 41431865 41453035 enh4419
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Astrocyte Bone (Osteoblast) Blood (GM12878) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
Transcript factors that have rs12952096[chr17:41448049]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 41447838 41448318 ZNF274 GTRD no Bone Marrow (K562) 21760030
chr17 41447873 41448419 ZNF274 GTRD no Bone Marrow (K562) 21760031
chr17 41447892 41448370 ZNF274 GTRD no Bone Marrow (K562) 21760032
chr17 41447956 41448329 ZNF274 GTRD no Bone Marrow (K562) 21760033
chr17 41447962 41448194 ZNF274 GTRD no Blood (GM12878) 21760034
chr17 41448045 41448054 PITX3 JASPAR yes 54339991
chr17 41448045 41448055 GSC2 JASPAR yes 54339992
chr17 41448045 41448055 GSC JASPAR yes 54339993
chr17 41448046 41448054 OTX1 JASPAR yes 54339994
Genes associated with rs12952096[chr17:41448049], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 41322498 41363708 + NBR1 ENSG00000188554.9 41322498 84341 Uterus 0.243194 15894