EnhancerDB
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  3. rs12972720[chr19:1854151]
Enhancers that have rs12972720[chr19:1854151]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 1850045 1876795 enh4955
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (GM12878) Placenta Blood (Karpas-422) Pancreas Uterus Thymus
Transcript factors that have rs12972720[chr19:1854151]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355215
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355216
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355217
chr19 1850599 1854179 ZNF274 GTRD no Blood (GM12878) 21832658
chr19 1850599 1856222 TCF7L2 GTRD no Colon (HCT116) 108355218
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355219
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355220
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355221
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 21832698
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355222
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355223
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355224
chr19 1851750 1854173 ZNF274 GTRD no Bone Marrow (K562) 21832703
chr19 1852617 1856671 ZNF143 GTRD no Epithelial (MCF-7) 108355225
chr19 1852846 1856263 ZNF143 GTRD no Epithelial (MCF-7) 108355226
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 21832711
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355227
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355228
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355229
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355230
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355231
chr19 1853105 1856400 ZBTB33 GTRD no Lung (A549) 108355232
chr19 1853559 1855422 ZNF274 GTRD no Bone Marrow (K562) 21832712
chr19 1853559 1855422 ZNF274 GTRD no Bone Marrow (K562) 108355233
chr19 1853874 1855781 ZNF274 GTRD no Bone Marrow (K562) 21832713
chr19 1853874 1855781 ZNF274 GTRD no Bone Marrow (K562) 108355234
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 21832714
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355235
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355236
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355237
chr19 1854140 1854154 PLAG1 JASPAR yes 112032591
chr19 1854141 1854160 CTCF JASPAR yes 112032592
chr19 1854141 1854162 ZNF263 JASPAR yes 112032593
chr19 1854142 1854157 ZIC3 JASPAR yes 112032595
chr19 1854142 1854157 ZIC4 JASPAR yes 112032596
chr19 1854143 1854157 GLIS2 JASPAR yes 112032597
chr19 1854143 1854157 ZIC1 JASPAR yes 112032598
chr19 1854150 1854171 ZNF263 JASPAR yes 112032599
Genes associated with rs12972720[chr19:1854151], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More