EnhancerDB
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  3. rs138927728[chr19:1860228]
Enhancers that have rs138927728[chr19:1860228]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 1850045 1876795 enh4955
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (GM12878) Placenta Blood (Karpas-422) Pancreas Uterus Thymus
Transcript factors that have rs138927728[chr19:1860228]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355215
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355216
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355217
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 21832698
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355222
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355223
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355224
chr19 1857472 1860706 ZNF274 GTRD no Bone Marrow (K562) 21833025
chr19 1857472 1860706 ZNF274 GTRD no Bone Marrow (K562) 108355719
chr19 1860217 1860236 RFX2 JASPAR yes 112033584
chr19 1860221 1860237 RFX2 JASPAR yes 112033585
chr19 1860221 1860237 RFX3 JASPAR yes 112033586
chr19 1860221 1860237 RFX4 JASPAR yes 112033587
chr19 1860221 1860237 RFX5 JASPAR yes 112033588
chr19 1860222 1860241 RFX2 JASPAR yes 112033589
Genes associated with rs138927728[chr19:1860228], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More