EnhancerDB
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  3. rs139105090[chr1:200307879]
Enhancers that have rs139105090[chr1:200307879]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200297972 200315295 enh868
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs139105090[chr1:200307879]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200307098 200308110 ZNF143 GTRD no Epithelial (MCF-7) 21363111
chr1 200307149 200307928 ZNF143 GTRD no Epithelial (MCF-7) 21363112
chr1 200307191 200308023 ZNF143 GTRD no Epithelial (MCF-7) 21363113
chr1 200307198 200308198 ZNF143 GTRD no Epithelial (MCF-7) 21363114
chr1 200307225 200308248 ZNF274 GTRD no Cervix (HeLa-S3) 21363115
chr1 200307243 200307912 ZNF274 GTRD no Liver (HepG2) 21363116
chr1 200307249 200308074 ZNF274 GTRD no Liver (HepG2) 21363117
chr1 200307271 200307974 ZNF274 GTRD no Liver (HepG2) 21363118
chr1 200307305 200307948 ZNF274 GTRD no Liver (HepG2) 21363119
chr1 200307305 200307993 ZNF274 GTRD no Liver (HepG2) 21363120
chr1 200307306 200307927 ZNF274 GTRD no Cervix (HeLa-S3) 21363121
chr1 200307309 200308017 ZNF143 GTRD no Epithelial (MCF-7) 21363122
chr1 200307319 200308012 ZNF143 GTRD no Epithelial (MCF-7) 21363123
chr1 200307320 200307992 ZNF274 GTRD no Cervix (HeLa-S3) 21363124
chr1 200307341 200307915 ZNF274 GTRD no Liver (HepG2) 21363126
chr1 200307350 200307977 ZNF143 GTRD no Epithelial (MCF-7) 21363127
chr1 200307362 200308005 ZNF143 GTRD no Epithelial (MCF-7) 21363128
chr1 200307369 200307939 ZNF143 GTRD no Epithelial (MCF-7) 21363129
chr1 200307393 200307937 ZNF274 GTRD no Liver (HepG2) 21363132
chr1 200307435 200307881 ZNF274 GTRD no Liver (HepG2) 21363136
chr1 200307464 200307956 ZNF143 GTRD no Epithelial (MCF-7) 21363139
chr1 200307872 200307883 CDX2 JASPAR yes 34436569
chr1 200307873 200307884 HOXC11 JASPAR yes 34436570
chr1 200307874 200307883 CDX1 JASPAR yes 34436571
chr1 200307874 200307884 HOXC10 JASPAR yes 34436572
chr1 200307874 200307884 HOXD11 JASPAR yes 34436573
chr1 200307879 200307893 SPI1 JASPAR yes 34436574
Genes associated with rs139105090[chr1:200307879], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More