EnhancerDB
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  3. rs139395878[chr1:200268310]
Enhancers that have rs139395878[chr1:200268310]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200249825 200279179 enh867
Prostate (PC-3) Liver (HepG2) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs139395878[chr1:200268310]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200267524 200268343 ZNF274 GTRD no Liver (HepG2) 21362915
chr1 200267703 200268310 ZNF274 GTRD no Liver (HepG2) 21362918
chr1 200267744 200268321 ZNF274 GTRD no Liver (HepG2) 21362919
chr1 200267830 200268436 ZNF274 GTRD no Liver (HepG2) 21362921
chr1 200267933 200268319 ZNF274 GTRD no Liver (HepG2) 21362922
chr1 200267952 200268420 ZNF274 GTRD no Liver (HepG2) 21362923
chr1 200268299 200268310 GCM1 JASPAR yes 34431457
chr1 200268308 200268317 ZEB1 JASPAR yes 34431458
chr1 200268309 200268319 ID4 JASPAR yes 34431459
chr1 200268309 200268319 TCF3 JASPAR yes 34431460
chr1 200268309 200268319 TCF4 JASPAR yes 34431461
chr1 200268310 200268319 SNAI2 JASPAR yes 34431462
Genes associated with rs139395878[chr1:200268310], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More