EnhancerDB
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  3. rs139874300[chr19:2054908]
Enhancers that have rs139874300[chr19:2054908]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2053625 2070755 enh4956
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung Blood (OCI-LY7) Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myotube) Heart
Transcript factors that have rs139874300[chr19:2054908]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2053517 2055175 TCF7L2 GTRD no Colon (HCT116) 21834138
chr19 2053764 2055850 TCF7L2 GTRD no Colon (HCT116) 21834139
chr19 2053843 2055168 TCF7L2 GTRD no Colon (HCT116) 21834141
chr19 2053949 2063305 TCF7L2 GTRD no Colon (HCT116) 21834143
chr19 2053949 2063305 TCF7L2 GTRD no Colon (HCT116) 108356650
chr19 2053949 2063305 TCF7L2 GTRD no Colon (HCT116) 108356651
chr19 2053949 2063305 TCF7L2 GTRD no Colon (HCT116) 108356652
chr19 2054425 2057089 ZNF274 GTRD no Cervix (HeLa-S3) 21834146
chr19 2054425 2057089 ZNF274 GTRD no Cervix (HeLa-S3) 108356653
chr19 2054538 2058987 ZNF274 GTRD no Blood (GM12878) 108356654
chr19 2054547 2055253 TCF7L2 GTRD no Colon (HCT116) 21834147
chr19 2054557 2056728 ZNF274 GTRD no Blood (GM12878) 108356655
chr19 2054606 2056845 ZNF274 GTRD no Blood (GM12878) 108356656
chr19 2054612 2055159 ZNF274 GTRD no Bone Marrow (K562) 21834148
chr19 2054626 2055176 ZNF274 GTRD no Cervix (HeLa-S3) 21834149
chr19 2054656 2055040 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21834150
chr19 2054687 2055182 ZNF274 GTRD no Cervix (HeLa-S3) 21834151
chr19 2054701 2055337 TCF7L2 GTRD no Colon (HCT116) 21834152
chr19 2054706 2055168 ZNF274 GTRD no Cervix (HeLa-S3) 21834153
chr19 2054706 2055187 TCF7L2 GTRD no Colon (HCT116) 21834154
chr19 2054707 2055171 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21834155
chr19 2054715 2055265 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21834156
chr19 2054722 2055179 ZNF274 GTRD no Cervix (HeLa-S3) 21834157
chr19 2054747 2055034 ZNF274 GTRD no Cervix (HeLa-S3) 21834158
chr19 2054760 2055020 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21834159
chr19 2054765 2055161 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21834160
chr19 2054775 2055151 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21834161
chr19 2054790 2055182 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21834162
chr19 2054831 2055101 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21834163
chr19 2054897 2054917 RREB1 JASPAR yes 112044940
Genes associated with rs139874300[chr19:2054908], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More