EnhancerDB
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Enhancers that have rs142878160[chr1:201277692]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201263092 201282279 enh12518
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Lung (PC-9) Brain (SK-N-SH) Bone (Osteoblast) Muscle (A673) Placenta Thyroid Muscle (Myoblast) Breast Thymus Heart
Transcript factors that have rs142878160[chr1:201277692]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201273925 201278373 ZNF274 GTRD no Cervix (HeLa-S3) 21363917
chr1 201273925 201278373 ZNF274 GTRD no Cervix (HeLa-S3) 107856105
chr1 201273925 201278373 ZNF274 GTRD no Cervix (HeLa-S3) 107856106
chr1 201276603 201277741 TCF7L2 GTRD no Colon (HCT116) 107856107
chr1 201276603 201277741 TCF7L2 GTRD no Colon (HCT116) 107856108
chr1 201276617 201278044 ZNF143 GTRD no Epithelial (MCF-7) 21363918
chr1 201276617 201278044 ZNF143 GTRD no Epithelial (MCF-7) 107856109
chr1 201276617 201278044 ZNF143 GTRD no Epithelial (MCF-7) 107856110
chr1 201276672 201277958 ZNF143 GTRD no Epithelial (MCF-7) 21363920
chr1 201276672 201277958 ZNF143 GTRD no Epithelial (MCF-7) 107856113
chr1 201276672 201277958 ZNF143 GTRD no Epithelial (MCF-7) 107856114
chr1 201276768 201278246 ZNF274 GTRD no Cervix (HeLa-S3) 21363922
chr1 201276768 201278246 ZNF274 GTRD no Cervix (HeLa-S3) 107856119
chr1 201276768 201278246 ZNF274 GTRD no Cervix (HeLa-S3) 107856120
chr1 201276816 201278104 ZNF274 GTRD no Cervix (HeLa-S3) 21363924
chr1 201276816 201278104 ZNF274 GTRD no Cervix (HeLa-S3) 107856123
chr1 201276816 201278104 ZNF274 GTRD no Cervix (HeLa-S3) 107856124
chr1 201276846 201278024 ZNF274 GTRD no Cervix (HeLa-S3) 21363925
chr1 201276846 201278024 ZNF274 GTRD no Cervix (HeLa-S3) 107856125
chr1 201276846 201278024 ZNF274 GTRD no Cervix (HeLa-S3) 107856126
chr1 201277130 201278301 ZNF143 GTRD no Epithelial (MCF-7) 21363939
chr1 201277130 201278301 ZNF143 GTRD no Epithelial (MCF-7) 107856147
chr1 201277130 201278301 ZNF143 GTRD no Epithelial (MCF-7) 107856148
chr1 201277154 201277814 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363940
chr1 201277154 201277814 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856149
chr1 201277154 201277814 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856150
chr1 201277311 201277842 ZNF274 GTRD no Cervix (HeLa-S3) 21363943
chr1 201277311 201277842 ZNF274 GTRD no Cervix (HeLa-S3) 107856154
chr1 201277420 201277909 ZNF143 GTRD no Epithelial (MCF-7) 21363944
chr1 201277420 201277909 ZNF143 GTRD no Epithelial (MCF-7) 107856155
chr1 201277682 201277694 PKNOX2 JASPAR yes 34489286
chr1 201277683 201277692 SNAI2 JASPAR yes 34489287
chr1 201277683 201277693 FIGLA JASPAR yes 34489288
chr1 201277683 201277693 ID4 JASPAR yes 34489289
Genes associated with rs142878160[chr1:201277692], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More