EnhancerDB
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  3. rs143213520[chr12:54608468]
Enhancers that have rs143213520[chr12:54608468]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54604917 54618893 enh2376
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Ovary Blood (T-cell) Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Thymus
Transcript factors that have rs143213520[chr12:54608468]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54608222 54608598 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21550289
chr12 54608356 54608700 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21550290
chr12 54608363 54609023 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21550291
chr12 54608417 54608933 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21550292
chr12 54608427 54609077 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21550293
chr12 54608440 54608936 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21550294
chr12 54608442 54608906 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21550295
chr12 54608449 54608889 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21550296
chr12 54608450 54608914 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21550297
chr12 54608459 54608471 PBX1 JASPAR yes 121029054
chr12 54608467 54608871 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21550298
Genes associated with rs143213520[chr12:54608468], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More