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- rs149108753[chr19:1548065]
Enhancers that have rs149108753[chr19:1548065]
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| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr19 |
1537125 |
1551004 |
enh17842 |
|
|
Transcript factors that have rs149108753[chr19:1548065]
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| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr19
|
1547013
|
1548176
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832114
|
|
|
chr19
|
1547061
|
1548330
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832115
|
|
|
chr19
|
1547088
|
1548344
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832116
|
|
|
chr19
|
1547152
|
1548190
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832118
|
|
|
chr19
|
1547270
|
1548203
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832122
|
|
|
chr19
|
1547534
|
1548143
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
21832139
|
|
|
chr19
|
1548057
|
1548071
|
PLAG1
|
JASPAR
|
yes
|
|
112017068
|
|
|
chr19
|
1548062
|
1548069
|
E2F1
|
TRANSFAC
|
yes
|
|
112017069
|
|
Genes associated with rs149108753[chr19:1548065], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |
|
chr19
|
2289774
|
2308156
|
-
|
LINGO3
|
ENSG00000220008.2
|
2308156
|
741709
|
Heart
|
0.233371
|
16780
|
|
|
chr19
|
1446300
|
1473243
|
+
|
APC2
|
ENSG00000115266.7
|
1446300
|
74822
|
Lung
|
0.0749724
|
16749
|
|