EnhancerDB
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  3. rs149398560[chr1:200405098]
Enhancers that have rs149398560[chr1:200405098]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200395745 200424875 enh27417
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Astrocyte Peripheral Blood (MM.1S) Lung (PC-9) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs149398560[chr1:200405098]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200403827 200409116 AR GTRD no Prostate (PC-3) 21363470
chr1 200405045 200405820 ZNF143 GTRD no Epithelial (MCF-7) 21363472
chr1 200405084 200405100 POU4F3 JASPAR yes 34446834
chr1 200405086 200405101 HNF1A JASPAR yes 34446839
chr1 200405090 200405105 HNF1A JASPAR yes 34446849
chr1 200405090 200405111 IRF1 JASPAR yes 34446850
chr1 200405094 200405109 PRDM1 JASPAR yes 34446851
chr1 200405094 200405109 STAT2 JASPAR yes 34446852
Genes associated with rs149398560[chr1:200405098], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More