EnhancerDB
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Enhancers that have rs1543876[chr1:179279809]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 179277545 179282471 enh27289
Skin (Keratinocyte) Prostate (PC-3) Prostate (RWPE1) Lung (PC-9) Astrocyte Bone (Osteoblast) Muscle (Myoblast) Pancreas Muscle (Myotube)
Transcript factors that have rs1543876[chr1:179279809]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 179279241 179280234 ZNF143 GTRD no Epithelial (MCF-7) 107847587
chr1 179279253 179280209 ZNF143 GTRD no Epithelial (MCF-7) 107847588
chr1 179279306 179280231 ZNF143 GTRD no Epithelial (MCF-7) 107847589
chr1 179279392 179280109 ZNF143 GTRD no Epithelial (MCF-7) 107847590
chr1 179279398 179280062 ZNF143 GTRD no Epithelial (MCF-7) 107847591
chr1 179279436 179280079 ZNF143 GTRD no Epithelial (MCF-7) 107847592
chr1 179279449 179280023 ZNF143 GTRD no Epithelial (MCF-7) 107847593
chr1 179279451 179279891 ZNF143 GTRD no Epithelial (MCF-7) 107847594
chr1 179279461 179279935 ZNF143 GTRD no Epithelial (MCF-7) 107847595
chr1 179279491 179280094 ZNF143 GTRD no Epithelial (MCF-7) 107847596
chr1 179279809 179279815 SOX10 JASPAR yes 33479387
Genes associated with rs1543876[chr1:179279809], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More