EnhancerDB
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  3. rs16853822[chr1:204450341]
Enhancers that have rs16853822[chr1:204450341]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204440545 204458655 enh12585
Cervix (HeLa-S3) Epithelial (MCF-7) Esophagus Liver Blood (GM12878) Stomach Muscle (A673) Placenta Colon (HCT116) Thyroid Lung (PC-9) Pancreas Thymus Heart
Transcript factors that have rs16853822[chr1:204450341]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204445469 204452372 ZNF274 GTRD no Cervix (HeLa-S3) 21370602
chr1 204445469 204452372 ZNF274 GTRD no Cervix (HeLa-S3) 107860455
chr1 204448070 204451798 ZNF274 GTRD no Cervix (HeLa-S3) 21370603
chr1 204448070 204451798 ZNF274 GTRD no Cervix (HeLa-S3) 107860456
chr1 204448215 204452084 ZNF274 GTRD no Cervix (HeLa-S3) 21370604
chr1 204448215 204452084 ZNF274 GTRD no Cervix (HeLa-S3) 107860457
chr1 204448387 204452269 ZNF274 GTRD no Cervix (HeLa-S3) 21370606
chr1 204448387 204452269 ZNF274 GTRD no Cervix (HeLa-S3) 107860459
chr1 204449042 204451296 ZNF143 GTRD no Epithelial (MCF-7) 21370607
chr1 204449042 204451296 ZNF143 GTRD no Epithelial (MCF-7) 107860460
chr1 204449392 204451676 ZNF143 GTRD no Epithelial (MCF-7) 21370608
chr1 204449392 204451676 ZNF143 GTRD no Epithelial (MCF-7) 107860461
chr1 204449594 204451306 ZNF143 GTRD no Epithelial (MCF-7) 21370610
chr1 204449594 204451306 ZNF143 GTRD no Epithelial (MCF-7) 107860464
chr1 204449607 204450647 TCF7L2 GTRD no Colon (HCT116) 21370611
chr1 204449607 204450647 TCF7L2 GTRD no Colon (HCT116) 107860465
chr1 204449622 204451363 ZNF274 GTRD no Blood (GM12878) 21370613
chr1 204449622 204451363 ZNF274 GTRD no Blood (GM12878) 107860467
chr1 204449655 204451401 TCF7L2 GTRD no Colon (HCT116) 21370617
chr1 204449655 204451401 TCF7L2 GTRD no Colon (HCT116) 107860471
chr1 204449694 204450483 TCF7L2 GTRD no Colon (HCT116) 21370619
chr1 204449694 204450483 TCF7L2 GTRD no Colon (HCT116) 107860473
chr1 204449771 204450613 ZNF274 GTRD no Bone Marrow (K562) 107860479
chr1 204450004 204451292 ZNF143 GTRD no Epithelial (MCF-7) 21370627
chr1 204450004 204451292 ZNF143 GTRD no Epithelial (MCF-7) 107860482
chr1 204450330 204450350 RREB1 JASPAR yes 34705378
Genes associated with rs16853822[chr1:204450341], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More